| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 13,812,309 – 13,812,401 |
| Length | 92 |
| Max. P | 0.920138 |
| Location | 13,812,309 – 13,812,401 |
|---|---|
| Length | 92 |
| Sequences | 3 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 75.34 |
| Mean single sequence MFE | -14.99 |
| Consensus MFE | -9.88 |
| Energy contribution | -10.44 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.66 |
| SVM decision value | 1.13 |
| SVM RNA-class probability | 0.920138 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13812309 92 - 22224390 GAUUUC-----------UACACACGUCAACUGCAUUCCAGACUUUGGAAUCCACUUGAAACAUAACCGAAAUCUGAUUG---ACCCCUCCCAUUCACUGGCACCAC ((((((-----------........((((.((.(((((((...))))))).)).)))).........))))))(((.((---........)).))).......... ( -16.03) >DroEre_CAF1 121319 84 - 1 CAUUUC-----------UACGCCCGUCAACUGCAUUCCAGACUUUGGAAUCCACUUGAAACAUAACCGAAAUCUGAGUGCCC---C--CCCAUUUG------CCAC ......-----------...((.........((((((.(((.(((((..................))))).)))))))))..---.--.......)------)... ( -12.68) >DroYak_CAF1 131470 94 - 1 CAUUUCAUUUCAACUGUGACGUCCGUCAACUGCAUUCCAGACUUUGGAAUCUACUUGAAACAUAACCGAAAUCUGAAUGCCC------CGCAUUUA------CCAC ................((((....))))...((((((.(((.(((((..................))))).)))))))))..------........------.... ( -16.27) >consensus CAUUUC___________UACGCCCGUCAACUGCAUUCCAGACUUUGGAAUCCACUUGAAACAUAACCGAAAUCUGAAUGCCC___C__CCCAUUUA______CCAC ...............................((((((.(((.(((((..................))))).))))))))).......................... ( -9.88 = -10.44 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:47 2006