Locus 5275

Sequence ID X_DroMel_CAF1
Location 13,809,448 – 13,809,542
Length 94
Max. P 0.982613
window8541

overview

Window 1

Location 13,809,448 – 13,809,542
Length 94
Sequences 5
Columns 105
Reading direction forward
Mean pairwise identity 91.45
Mean single sequence MFE -24.62
Consensus MFE -24.20
Energy contribution -24.24
Covariance contribution 0.04
Combinations/Pair 1.04
Mean z-score -1.53
Structure conservation index 0.98
SVM decision value 1.92
SVM RNA-class probability 0.982613
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13809448 94 + 22224390
UGUCGGUGACACAACUAAUCAAGUGUUAACCAGUCCAAAAGCCUUCGCUGCGGUCACUUUUCC-UAGAGGUGACAGAUGGGGCAAAAA----------AAAAAAG
....((((((((..........))))).))).((((...(((....)))...((((((((...-..)))))))).....)))).....----------....... ( -24.70)
>DroSec_CAF1 116005 89 + 1
UGUCGGUGACACAACUAAUCAAGUGUUAACCAGUCCAAAAGCCUUCGCUGCGGUCACUUUUCC-UAGAGGUGACAGAUGGGGCAAA---------------AAAG
....((((((((..........))))).))).((((...(((....)))...((((((((...-..)))))))).....))))...---------------.... ( -24.70)
>DroSim_CAF1 116472 89 + 1
UGUCGGUGACACAACUAAUCAAGUGUUAACCAGUCCAAAAGCCUUCGCUGCGGUCACUUUUCC-UAGAGGUGACAGAUGGGGCAAA---------------AAAG
....((((((((..........))))).))).((((...(((....)))...((((((((...-..)))))))).....))))...---------------.... ( -24.70)
>DroEre_CAF1 118508 91 + 1
UGUCGGUGACACAACUAAUCAAGUGUUAACCAGUCCAAAAGCCUUCGCUGCGGUCACUUUUCCAUAGAGGUGACAGAUGGGGCAAA--------------AAAAG
....((((((((..........))))).))).((((...(((....)))...((((((((......)))))))).....))))...--------------..... ( -24.90)
>DroYak_CAF1 127976 104 + 1
UGUCGCUGACACAACUAAUCAAGUGUUAACCAGUCCAAAAGCCUUCGCUGCGGUCACUUCUCC-UAGAGGUGACAGAUGGGGCAAAAUAAAAAAAUAGAAAAAAG
((((..((((((..........)))))).(((.((....(((....)))...((((((((...-..)))))))).)))))))))..................... ( -24.10)
>consensus
UGUCGGUGACACAACUAAUCAAGUGUUAACCAGUCCAAAAGCCUUCGCUGCGGUCACUUUUCC_UAGAGGUGACAGAUGGGGCAAA______________AAAAG
....((((((((..........))))).))).((((...(((....)))...((((((((......)))))))).....))))...................... (-24.20 = -24.24 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:46 2006