Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 13,805,602 – 13,805,714 |
Length | 112 |
Max. P | 0.713586 |
Location | 13,805,602 – 13,805,714 |
---|---|
Length | 112 |
Sequences | 3 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 76.33 |
Mean single sequence MFE | -18.72 |
Consensus MFE | -16.34 |
Energy contribution | -16.90 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.06 |
Mean z-score | -0.70 |
Structure conservation index | 0.87 |
SVM decision value | 0.38 |
SVM RNA-class probability | 0.713586 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13805602 112 - 22224390 AUUUUAUAUUUGUCUCGUUAUGGCAUUU-CCCCUGACCCUUUCCACUCCCCCCCCCUCCCCCU--CCCCAGUCCAUAUAAAAAACUCUCGAAAUGGAGAGAUGCCGUGACAUUUG ................((((((((((((-(..(((............................--...)))(((((................))))))))))))))))))..... ( -21.67) >DroEre_CAF1 114627 95 - 1 AUUUUAUAUUUGUCUCGUUAUGAAAUUU-CCCCCGCCCC-UGCCACUU----------CUG----CCCAAGUCC----AAAACACUCUCGAAAUGGAGAGAUGCCGUGACAUUUG ..........((((.((.(((.......-..........-....((((----------...----...))))..----......(((((......)))))))).)).)))).... ( -13.30) >DroYak_CAF1 124134 111 - 1 AUUUUAUAUUUGUCUUGUAAUGGCAUAUACCCCCGCCCC-CGCCCCCG---CUCCUUGCUGCUCCCCCUUGUCCGUAUAAAACACUCUCGAAAUGGAGAGAUGCCGUGACAUUUG ...............(((.(((((((((((....((...-.))....(---(.....))...............))))).....(((((......))))).)))))).))).... ( -21.20) >consensus AUUUUAUAUUUGUCUCGUUAUGGCAUUU_CCCCCGCCCC_UGCCACUC___C_CC_U_CUGCU__CCCAAGUCC_UAUAAAACACUCUCGAAAUGGAGAGAUGCCGUGACAUUUG ................((((((((((........((.....)).........................................(((((......)))))))))))))))..... (-16.34 = -16.90 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:45 2006