| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 13,804,857 – 13,804,973 |
| Length | 116 |
| Max. P | 0.526424 |
| Location | 13,804,857 – 13,804,973 |
|---|---|
| Length | 116 |
| Sequences | 3 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 67.46 |
| Mean single sequence MFE | -20.70 |
| Consensus MFE | -12.92 |
| Energy contribution | -13.60 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.11 |
| Structure conservation index | 0.62 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.526424 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13804857 116 + 22224390 CGUGACAUAAAAAAAAAAAAAACUAAGAGAGAUCGCCAUCGUCGAGUGUCGCGACUAUUGGAUACCCACUACUUAGAUAGUGA--AGUGCUCGAUAGAUUGAGAUACAAAUUUUACUG ((((((((..............((.....)).((((....).))))))))))).((((((..(((.(((((......))))).--.)))..))))))..((((((....))))))... ( -23.80) >DroEre_CAF1 113953 95 + 1 CGUGACACAUAAAA-----AAAGU-AGAGGCAACGCCAUAGUCAAGUGUCGCGACUAUUAGAUACCCAUUACUCAGAUAGUGACAAGCAACGUAUAUCCUU----------------- ((((((((((....-----...))-...(((...)))........))))))))((((((.((..........)).))))))....................----------------- ( -16.70) >DroYak_CAF1 123370 102 + 1 CGUGACACAUAAAA---AAAAACU-AGAGAAAACUUUUUAGUUAAGUGUCGCGACUAUUAGAUACUCCUUACUUAGCUAGUGA--AGCAAUUGAUAGAUUGAGAUACA---------- ((((((((.((...---....(((-(((((....)))))))))).)))))))).(((((((...((..(((((.....)))))--))...)))))))...........---------- ( -21.61) >consensus CGUGACACAUAAAA___AAAAACU_AGAGAAAACGCCAUAGUCAAGUGUCGCGACUAUUAGAUACCCAUUACUUAGAUAGUGA__AGCAAUCGAUAGAUUGAGAUACA__________ ((((((((.....................................)))))))).(((((((.......(((((.....))))).......)))))))..................... (-12.92 = -13.60 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:45 2006