| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 13,791,444 – 13,791,540 |
| Length | 96 |
| Max. P | 0.982702 |
| Location | 13,791,444 – 13,791,540 |
|---|---|
| Length | 96 |
| Sequences | 4 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 84.63 |
| Mean single sequence MFE | -15.00 |
| Consensus MFE | -12.57 |
| Energy contribution | -12.95 |
| Covariance contribution | 0.38 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.48 |
| Structure conservation index | 0.84 |
| SVM decision value | 1.92 |
| SVM RNA-class probability | 0.982702 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13791444 96 - 22224390 AUAUUUGAAAAACUACUUCAAACCCACCAUUUU--AUAACGCAUUUCUCUGUGUGAUAUCUAUUGUACAAAUCUUCUGCCAAACAGGUAGAAUACAAA ...((((((.......))))))...........--....(((((......))))).......(((((......(((((((.....)))))))))))). ( -16.30) >DroSec_CAF1 98528 95 - 1 AUAUUU-AAAAACUACUUCAAACCCACCAUUUU--AUAUCGCAUUUCUCUGUGUUAUAUCUAUUCUACAAAUCUUCUGCCAAAUAGGUAGAAUACAAA ......-.........................(--(((.((((......)))).))))...............(((((((.....)))))))...... ( -12.20) >DroEre_CAF1 100380 97 - 1 AUCUUU-AAGAACUACUUUAAAACCACCAUUUUAUAUAUCGCAUUUCUCUAUAUGAUAUCUAGUGUAGAAAUCUUUUGCCAAACAGGUAGAAUACAAA ...(((-(((......)))))).........................(((((((........)))))))....(((((((.....)))))))...... ( -11.00) >DroYak_CAF1 109286 86 - 1 AUCUUU-GAAAACUACUU---------CAUUUU--AUAUCGCAUUUCUUUGUGUGAUAUCUAGUUUACAAAUCUUCUGCCAAACAGGUAGAAUUCGAA ...(((-(.((((((...---------......--(((((((((......))))))))).)))))).))))..(((((((.....)))))))...... ( -20.50) >consensus AUAUUU_AAAAACUACUUCAAACCCACCAUUUU__AUAUCGCAUUUCUCUGUGUGAUAUCUAGUGUACAAAUCUUCUGCCAAACAGGUAGAAUACAAA ...................................(((((((((......)))))))))..............(((((((.....)))))))...... (-12.57 = -12.95 + 0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:42 2006