Locus 5268

Sequence ID X_DroMel_CAF1
Location 13,784,788 – 13,784,889
Length 101
Max. P 0.555019
window8532

overview

Window 2

Location 13,784,788 – 13,784,889
Length 101
Sequences 6
Columns 106
Reading direction forward
Mean pairwise identity 81.56
Mean single sequence MFE -19.49
Consensus MFE -11.87
Energy contribution -11.65
Covariance contribution -0.22
Combinations/Pair 1.17
Mean z-score -1.78
Structure conservation index 0.61
SVM decision value 0.04
SVM RNA-class probability 0.555019
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13784788 101 + 22224390
AGCAUGACACAAA----UAUUUUUACCCCGCAAUUCUACGCUGGCAAUUCUUCUUGUGCUCCACUUUGAUUUGCUUAUCAAGAUCAAAGAGAUC-GCUGCUCUUCU
((((((((((((.----.........((.((........)).)).........))))).....(((((((((........)))))))))...))-).))))..... ( -19.11)
>DroSec_CAF1 92154 101 + 1
AGCAUGACACAAA----UAUUUUCGCCUCGCAAUUCUCCGCUGGCAAUUCUACUCGUGCUCCACUUUGAUUUGCUUAUCAAGAUCAAAGAGAUC-GCUCCCAUUCU
(((((((......----.(((...(((..((........)).)))))).....)))))))...(((((((((........))))))))).....-........... ( -19.40)
>DroSim_CAF1 98508 101 + 1
AGCAUGACACAAA----UUUUUUCGCCUCGCAAUUCUCCGCUGGCAAUUUUUCUCGUGCUCCACUUUGAUUUGCUUAUCAAGAUCAAAGAGAUC-GCUCCCAUUCU
(((((((.(.(((----((.....(((..((........)).)))))))).).)))))))...(((((((((........))))))))).....-........... ( -21.40)
>DroEre_CAF1 93685 105 + 1
AUCAUGACACAUAUGUAUAUCUUCGCCCCGCAAUUCUCCGCUGGCAAUUCUUCUCAUGCUCCACUUUGAUUUGCUUAUCAAGAUCAAAGAGAUC-GCUGCUCUCCU
..(((((.((....))........(((..((........)).)))........))))).....(((((((((........))))))))).....-........... ( -17.20)
>DroYak_CAF1 102336 101 + 1
AUCAUGACACAAA----UAUCUUUGCUCCGCAAUUCUCCUUCAGCAAUUCUUCUCAUGCUCCACUUUGAAUUGCUUAUCAAGAUCAAAGAGAUC-GCUGCUCCUCU
.............----.......((..((((((((......((((..........)))).......))))))).......((((.....))))-)..))...... ( -15.82)
>DroAna_CAF1 101184 97 + 1
-----AAUAGAAA----CAUCUUGGAGGCAAAUUUCUACUCUGGCGUUUCUGCAUUUGCUCCACUUUGAUUUGCUUAUCAAGAUCAAAGAGAUCCGUUUCUCCGCU
-----...(((((----((((((((((.(((((..(......)(((....)))))))))))))(((((((((........)))))))))))))..))))))..... ( -24.00)
>consensus
AGCAUGACACAAA____UAUCUUCGCCCCGCAAUUCUCCGCUGGCAAUUCUUCUCGUGCUCCACUUUGAUUUGCUUAUCAAGAUCAAAGAGAUC_GCUGCUCUUCU
.............................((...(((.....((((..........))))...(((((((((........))))))))))))...))......... (-11.87 = -11.65 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:39 2006