Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 13,779,777 – 13,779,873 |
Length | 96 |
Max. P | 0.561756 |
Location | 13,779,777 – 13,779,873 |
---|---|
Length | 96 |
Sequences | 4 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 98.44 |
Mean single sequence MFE | -21.88 |
Consensus MFE | -19.67 |
Energy contribution | -19.93 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -1.88 |
Structure conservation index | 0.90 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.561756 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13779777 96 - 22224390 CGCAAUUGAGUCUCUCAGUUGAGUUCAGUUGUUGUCUUUAUCAGAUUGUUGCAAUUUUCUGUUGUUCAAUGUUUUGCUGUUGUUGUAACUGCGAUU .(((((((((.(((......))))))))))))............((((..(((((.....))))).))))...((((.((((...)))).)))).. ( -21.00) >DroSec_CAF1 87183 96 - 1 CGCAAUUGAGUCUCUCAGUUGAGUUCAGUUGUUGUCUUUAUCAGAUUGUUGCAAUUUUCUGUUGUUCAAUGUUUUGCUGUUGUUGUAACUGCGAUU .(((((((((.(((......))))))))))))............((((..(((((.....))))).))))...((((.((((...)))).)))).. ( -21.00) >DroSim_CAF1 93594 96 - 1 CGCAAUUGAGUCUCUCAGUUGAGUUCAGUUGUUGUCUUUAUCAGAUUGUUGCAAUUUUCUGUUGUUCAAUGUUUUGCUGUUGUUGUAACUGCGAUU .(((((((((.(((......))))))))))))............((((..(((((.....))))).))))...((((.((((...)))).)))).. ( -21.00) >DroYak_CAF1 96527 96 - 1 CGCAAUUGAGUCUCUCAGUUGAGUUCAGUUGUUGUCUUUAUCAGAUUGUUGCAAUUUUCUGUUGUUCAAUGUUUGGCUGUUGUUGUUACGGCGAUU .(((((((((.(((......)))))))))))).(((.....(((((....(((((.....))))).....)))))(((((.......)))))))). ( -24.50) >consensus CGCAAUUGAGUCUCUCAGUUGAGUUCAGUUGUUGUCUUUAUCAGAUUGUUGCAAUUUUCUGUUGUUCAAUGUUUUGCUGUUGUUGUAACUGCGAUU .(((((((((.(((......)))))))))))).......(((..((((..(((((.....))))).)))).....((.(((.....))).))))). (-19.67 = -19.93 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:38 2006