Locus 5266

Sequence ID X_DroMel_CAF1
Location 13,778,919 – 13,779,027
Length 108
Max. P 0.611756
window8530

overview

Window 0

Location 13,778,919 – 13,779,027
Length 108
Sequences 4
Columns 108
Reading direction reverse
Mean pairwise identity 60.65
Mean single sequence MFE -21.68
Consensus MFE -10.32
Energy contribution -10.07
Covariance contribution -0.25
Combinations/Pair 1.41
Mean z-score -1.36
Structure conservation index 0.48
SVM decision value 0.16
SVM RNA-class probability 0.611756
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13778919 108 - 22224390
AUCAUUUGAUUUACCAGCAUAUGUGAAGUGCUUUGUAUGCAUUUAAUAAAUUUAGAGAUUUGCUGCUUUGCAGUGACAUAAAUGAUUGUUAAACGAUCGAUCUAGUUU
(((..(((.((((.((((((.((((((((((.......))))))...............(..((((...))))..))))).))).))).)))))))..)))....... ( -20.40)
>DroPse_CAF1 99650 102 - 1
UUUCACCCUACGAUCAAACCCCCAAGACAAUCCCAACAAGCCCAAUUCUCUCUCUUGGAUGCAGUAGAUCUUCCAGCCCCUCGGAUCGUUUAACGAUCGAUC------
..........(((((......((((((.........................))))))......(((((..(((........)))..)))))..)))))...------ ( -17.21)
>DroSec_CAF1 86334 108 - 1
GUCAUUUGAUUUACCUGCAUAUGUGAACUGCAUUGUAUGCAUUUAACAAAUUUAGAGAUCUGCUGCUUUGCAGUUACAUAAAUGAUUGUUAAACGAGCGAUCUAGUUU
...................(((((((.(((((..(((.((((((((.....)))))....))))))..))))))))))))...(((((((.....)))))))...... ( -24.50)
>DroSim_CAF1 92751 108 - 1
GUCAUUUGAUUUACCUGCAUAUGUGAACUGCAUUGUAUGCAUUUAAUAAAUUUAGAGAUCUGCUGCUUUGCAGUGACAUAAAUGAUUGUUAAACGAGCGAUCUAGUUU
...................(((((..((((((..(((.((((((((.....)))))....))))))..)))))).)))))...(((((((.....)))))))...... ( -24.60)
>consensus
GUCAUUUGAUUUACCAGCAUAUGUGAACUGCAUUGUAUGCAUUUAAUAAAUUUAGAGAUCUGCUGCUUUGCAGUGACAUAAAUGAUUGUUAAACGAGCGAUCUAGUUU
...................(((((.(.(((((..(((.((((((...........)))..))))))..)))))).)))))...(((((((.....)))))))...... (-10.32 = -10.07 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:37 2006