| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 13,761,334 – 13,761,435 |
| Length | 101 |
| Max. P | 0.801942 |
| Location | 13,761,334 – 13,761,435 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 86.83 |
| Mean single sequence MFE | -29.17 |
| Consensus MFE | -24.37 |
| Energy contribution | -24.82 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.10 |
| Structure conservation index | 0.84 |
| SVM decision value | 0.62 |
| SVM RNA-class probability | 0.801942 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13761334 101 - 22224390 GAUGGUUAACCCACGCAUGCCUGAGCAAUUUAGUGUGUUAAGGCUUUUGCACUAAAAUAAAUCUACGGCGAUUUGUUUGUUUGCACAAGCUGCCGGCUGUU ..((((((((.(((...(((....))).....))).)))).(((((.((((...(((((((((......)))))))))...)))).)))))))))...... ( -27.80) >DroPse_CAF1 83386 93 - 1 AAUGGUUAACCCACGCAUGCCUGAGCAAUUUAGUGUGUUAAGGCUUUUGCACUAAAAUAAAUCUACAGCGAUUUGUUUGUUUGCACAAGCCUC-------- .....(((((.(((...(((....))).....))).)))))(((((.((((...(((((((((......)))))))))...)))).)))))..-------- ( -27.80) >DroWil_CAF1 81276 95 - 1 A---CUUGGCCCACGCAUGCCUGAGCAAUUUGGUGUUGU-AGGCUCGUGCACUAAAAUAAAUCUACGGCGAUUUGUUUGUUUGCACAAGCCGCGG-CAGC- .---....(((((((.(((((.((....)).))))))))-.((((.(((((...(((((((((......)))))))))...))))).))))).))-)...- ( -33.60) >DroYak_CAF1 81061 101 - 1 GAUGGUUAACCCACGCAUGCCUGAGCAAUUUGGUGUGUUAAGGCUUUUGCACUAAAAUAAAUCUACGGCGAUUUGUUUGUUUGCACAAGCUGCCGGCUGUU ..((((........(((((((.((....)).)))))))...(((((.((((...(((((((((......)))))))))...)))).)))))))))...... ( -29.70) >DroAna_CAF1 77462 101 - 1 GACUGUUAACCCACGCAUGCCCGAGCAAUUUAGUGUGUUAAGGCCUUUGCACUAAAAUAAAUCUGCGGCGAUUUGUUUGUUUGCACAAGCUGCCGGCAGUG .(((((((((.(((...(((....))).....))).)))).((((((((((...(((((((((......)))))))))...)))).)))..))).))))). ( -28.30) >DroPer_CAF1 83801 93 - 1 AAUGGUUAACCCACGCAUGCCUGAGCAAUUUAGUGUGUUAAGGCUUUUGCACUAAAAUAAAUCUACAGCGAUUUGUUUGUUUGCACAAGCCUC-------- .....(((((.(((...(((....))).....))).)))))(((((.((((...(((((((((......)))))))))...)))).)))))..-------- ( -27.80) >consensus AAUGGUUAACCCACGCAUGCCUGAGCAAUUUAGUGUGUUAAGGCUUUUGCACUAAAAUAAAUCUACGGCGAUUUGUUUGUUUGCACAAGCCGCCG_C_GU_ .....(((((.(((...(((....))).....))).)))))(((((.((((...(((((((((......)))))))))...)))).))))).......... (-24.37 = -24.82 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:33 2006