Locus 5261

Sequence ID X_DroMel_CAF1
Location 13,754,762 – 13,754,855
Length 93
Max. P 0.757353
window8522

overview

Window 2

Location 13,754,762 – 13,754,855
Length 93
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 81.29
Mean single sequence MFE -25.08
Consensus MFE -15.68
Energy contribution -16.18
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -2.11
Structure conservation index 0.63
SVM decision value 0.49
SVM RNA-class probability 0.757353
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13754762 93 + 22224390
UUAGAUUAGUCGCCUGUAAUUAGUUAAUAACAUGGCAAGGCAUGUCUAAAUUGCAGU-CGCGACAUCAAAUUGCAAGCGGCUGCAUUUUGAUGC--------
((((((..(((((((((.(((....))).))).)))..)))..))))))..((((((-(((..((......))...))))))))).........-------- ( -28.30)
>DroPse_CAF1 76048 85 + 1
UUAGAUUAGUCGCCUGUAAUUAGUUAAUAACAUGGCAAGGCAUGUCUAAAUUGCUGCGCGCGACAUCAAGUUGCACGUUGC---------ACGG--------
((((((..(((((((((.(((....))).))).)))..)))..))))))..(((.(((.(((((.....))))).))).))---------)...-------- ( -26.00)
>DroWil_CAF1 73071 82 + 1
UUAGAUUAGUCGCCUGUAAUUAGUUAAUAACAUGGCAUGGCAUGUCUAAAUUGCAGU-CGCGACAUUAAAUUGCAAGCGGCA---------A----------
........(((((.(((((((........(((((......))))).....((((...-.)))).....))))))).))))).---------.---------- ( -20.70)
>DroMoj_CAF1 85850 101 + 1
UUAGAUUAGUCGCCUGUAAUUAGUUAAUAACAUGGCAUGGCAUGUCUAAAUUGCAGU-CGCGACAUCAAAUUGUAAGCGGCUACAUUUUGAUGCUGCUGCUG
((((((..(((((((((.(((....))).))).)))..)))..))))))....((((-.(((.(((((((.((((......)))).))))))).))).)))) ( -30.40)
>DroAna_CAF1 71854 78 + 1
UUAGAUUAGUCGCCUGUAAUUAGUUAAUAACAUGGCAAGGCAUGUCUAAAUGGCAGU-CGCGACAUCGAGUGGCAAGAG-----------------------
((((((..(((((((((.(((....))).))).)))..)))..)))))).((.((.(-((......))).)).))....----------------------- ( -19.10)
>DroPer_CAF1 76217 85 + 1
UUAGAUUAGUCGCCUGUAAUUAGUUAAUAACAUGGCAAGGCAUGUCUAAAUUGCUGCGCGCGACAUCAAGUUGCACGUUGC---------ACGG--------
((((((..(((((((((.(((....))).))).)))..)))..))))))..(((.(((.(((((.....))))).))).))---------)...-------- ( -26.00)
>consensus
UUAGAUUAGUCGCCUGUAAUUAGUUAAUAACAUGGCAAGGCAUGUCUAAAUUGCAGU_CGCGACAUCAAAUUGCAAGCGGC_________ACG_________
........(((((((((((((((......(((((......))))))).))))))))...)))))...................................... (-15.68 = -16.18 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:30 2006