Locus 5258

Sequence ID X_DroMel_CAF1
Location 13,735,385 – 13,735,479
Length 94
Max. P 0.526245
window8517

overview

Window 7

Location 13,735,385 – 13,735,479
Length 94
Sequences 6
Columns 95
Reading direction forward
Mean pairwise identity 80.95
Mean single sequence MFE -22.23
Consensus MFE -16.57
Energy contribution -16.85
Covariance contribution 0.28
Combinations/Pair 1.11
Mean z-score -1.14
Structure conservation index 0.75
SVM decision value -0.01
SVM RNA-class probability 0.526245
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13735385 94 + 22224390
CUAC-UUAGAUGUACAUACAUAUAUGAGUACUCACCUUAUGGGCUCUGAUGGAUGUGCCCUCUGAACAAACUAGUGUGACGUCCACCAGGCUCCC
.(((-(((.((((....))))...))))))..........((((.(((.(((((((.(.(.(((.......))).).)))))))).))))))).. ( -25.70)
>DroGri_CAF1 59257 76 + 1
CU----------------U-UUUG--GGAACUCACCUUAUGGGCUCUGAUGGAUGGGCCCCCUGAACAAGCUAAUGUAACGUCCACCAGGCUCUC
..----------------.-...(--(.......))....((((.(((.(((((((....))...(((......)))...))))).))))))).. ( -18.40)
>DroSec_CAF1 46525 87 + 1
AUACCUUAGAUG--------UAUAUGAGUACUCACCUUAUGGGCUCUGAUGGAUGUGCCCUCUGAACAAACUAGUGUGACGUCCACCAGGCUCCC
........((.(--------(((....)))))).......((((.(((.(((((((.(.(.(((.......))).).)))))))).))))))).. ( -21.70)
>DroSim_CAF1 52676 87 + 1
AUACCUUAGAUA--------UAUGUGAGUACUCACCUUAUGGGCUCUGAUGGAUGUGCCCUCUGAACAAACUAGUGUGACGUCCACCAGGCUCCC
............--------...((((....)))).....((((.(((.(((((((.(.(.(((.......))).).)))))))).))))))).. ( -22.40)
>DroEre_CAF1 46598 87 + 1
AAAGCUGAGAUA--------UAGAACAGUACUCACCUUAUGGGCUCUGAUGGAUGCGCCCUCUGAACAAGCUAGUGUGACGUCCACCAGGCUCCC
.(((.((((.((--------(......))))))).)))..((((.(((.(((((((((.((((.....))..)).))).)))))).))))))).. ( -25.90)
>DroWil_CAF1 54247 84 + 1
AAA---AAUAUA--------AAGGAAAUCACUCACCUUAUGGGCUCUGAUGGAUGUGCCCUCUGAACAAGCUAAUGUAACGUCCACCAGGCUCUC
...---......--------((((..........))))..((((.(((.(((((((((...((.....)).....)).))))))).))))))).. ( -19.30)
>consensus
AUAC_UUAGAUA________UAUAUGAGUACUCACCUUAUGGGCUCUGAUGGAUGUGCCCUCUGAACAAACUAGUGUGACGUCCACCAGGCUCCC
........................................((((.(((.(((((((((...(((.......))).))).)))))).))))))).. (-16.57 = -16.85 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:26 2006