| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 13,726,682 – 13,726,772 |
| Length | 90 |
| Max. P | 0.735201 |
| Location | 13,726,682 – 13,726,772 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 76.83 |
| Mean single sequence MFE | -21.33 |
| Consensus MFE | -10.90 |
| Energy contribution | -11.40 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.51 |
| SVM decision value | 0.43 |
| SVM RNA-class probability | 0.735201 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13726682 90 - 22224390 CAACGCCAGUUGCA-UUGCCGUUGUUGCUA-U--UGCCGUGC--CCAUAACGGUGUCAAUUAAAUUAUGUUGCAGGCAACAUUUUACAAUUUGCAA ....((.(((((..-..((((((((.((..-.--......))--..))))))))............((((((....))))))....))))).)).. ( -20.70) >DroGri_CAF1 48209 73 - 1 CU---GCUGUUG------------UUG-UUG-----CCGUGC--CCAUAACGGCGUCAAUUAAAUUAUGUUGCUGGCAACAUUUUACAAUUUGCAA .(---((.((((------------(((-(((-----((..((--(......)))(.((((........))))).)))))))....)))))..))). ( -21.60) >DroSim_CAF1 44364 90 - 1 CAACGCCAGUUGCG-UUGCAGUUGUUGCUG-U--UGCCGUGC--CCAUAACGGUGUCAAUUAAAUUAUGUUGCAGGCAACAUUUUACAAUUUGCAA .(((((.....)))-))((((((((...((-(--((((.(((--.(((((...((.....))..)))))..))))))))))....)))).)))).. ( -26.70) >DroEre_CAF1 38603 70 - 1 CAACGGCAGU------------------------UGCCGUGC--CCAUAACGGUGUCAAUUAAAUUAUGUUGCCGGCAACAUUUUACAAUUUGCAA ..(((((...------------------------.)))))((--(......)))((.((((.....((((((....)))))).....)))).)).. ( -17.10) >DroYak_CAF1 45051 91 - 1 CAACGGCAGUUACAAUUGUUGCUAUUGCUA-U--UGCCGUGC--CCAUAACGGUGUCAAUUAAAUUAUGUUGCCGGCAACAUUUUACAAUUUGCAA ..((((((((..((((.......))))..)-)--))))))((--(......)))((.((((.....((((((....)))))).....)))).)).. ( -23.00) >DroAna_CAF1 40110 86 - 1 UAACGCAAA---------CGGGUUUUGCUG-CCAGGCCAUGCCCCCAUAAAAGUGUCAAUUAAAUUAUGUUGCCGGCAACAUUUUACAAUUUGCAA ....(((((---------.((((...(((.-...)))...))))......................((((((....)))))).......))))).. ( -18.90) >consensus CAACGCCAGUUG______C_G_U_UUGCUA_U__UGCCGUGC__CCAUAACGGUGUCAAUUAAAUUAUGUUGCCGGCAACAUUUUACAAUUUGCAA ...................................(((((.........)))))((.((((.....((((((....)))))).....)))).)).. (-10.90 = -11.40 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:24 2006