Locus 5255

Sequence ID X_DroMel_CAF1
Location 13,722,345 – 13,722,440
Length 95
Max. P 0.532604
window8514

overview

Window 4

Location 13,722,345 – 13,722,440
Length 95
Sequences 5
Columns 96
Reading direction reverse
Mean pairwise identity 96.56
Mean single sequence MFE -15.38
Consensus MFE -12.26
Energy contribution -12.26
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.69
Structure conservation index 0.80
SVM decision value -0.00
SVM RNA-class probability 0.532604
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13722345 95 - 22224390
CCUCUCUGCGCCUGUCAUCGAAAAAAUCAAUAAAAUUAAAUUGCCCACACACACAAUUAUCGGCAGG-GGAAAGCAAUCGAUAACGAUAAUCCAUC
..........((((((...((.....))..........(((((..........)))))...))))))-(((.....((((....))))..)))... ( -13.30)
>DroSec_CAF1 33358 91 - 1
CCUC----AGCCUGUCAUCGAAAAAAUCAAUAAAAUUAAAUUGCCCACACACACAAUUAUCGGCAGG-GGAAAGCAAUCGAUAACGAUAAUCCAUC
....----..((((((...((.....))..........(((((..........)))))...))))))-(((.....((((....))))..)))... ( -13.30)
>DroSim_CAF1 39723 91 - 1
CCUC----AGCCUGUCAUCGAAAAAAUCAAUAAAAUUAAAUUGCCCACACACACAAUUAUCGGCAGG-GGAAAGCAAUCGAUAACGAUAAUCCAUC
....----..((((((...((.....))..........(((((..........)))))...))))))-(((.....((((....))))..)))... ( -13.30)
>DroEre_CAF1 34308 91 - 1
CCCC----UGCCUGUCAUCGAAAAAAUCAAUAAAAUUAAAUUGCCCACACACACAAUUAUCGGCAGG-GGAAAGCAAUCGAUAACGAUAAUCCAUC
((((----((((.......((.....))..........(((((..........)))))...))))))-))......((((....))))........ ( -19.90)
>DroYak_CAF1 40243 92 - 1
CCUC----UGCCUGUCAUCGAAAAAAUCAAUAAAAUUAAAUUGCCCACACACACAAUUAUCGGCAGGGGGAAAGCAAUCGAUAACGAUAAUCCAUC
((((----((((.......((.....))..........(((((..........)))))...)))))))).......((((....))))........ ( -17.10)
>consensus
CCUC____AGCCUGUCAUCGAAAAAAUCAAUAAAAUUAAAUUGCCCACACACACAAUUAUCGGCAGG_GGAAAGCAAUCGAUAACGAUAAUCCAUC
..........((((((...((.....))..........(((((..........)))))...)))))).(((.....((((....))))..)))... (-12.26 = -12.26 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:23 2006