Locus 5254

Sequence ID X_DroMel_CAF1
Location 13,721,689 – 13,721,782
Length 93
Max. P 0.746883
window8513

overview

Window 3

Location 13,721,689 – 13,721,782
Length 93
Sequences 5
Columns 111
Reading direction reverse
Mean pairwise identity 80.73
Mean single sequence MFE -28.48
Consensus MFE -19.28
Energy contribution -20.04
Covariance contribution 0.76
Combinations/Pair 1.04
Mean z-score -1.81
Structure conservation index 0.68
SVM decision value 0.46
SVM RNA-class probability 0.746883
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13721689 93 - 22224390
CAGAU-UCAGCCGUCACACCCAAGUUUGGCAACUAGCGAAGAGCCAACGCAGCGCAAAAAGGUUAGCCAAACUCUGGGAUCUGCCGAAA---UAU-----AG---------
....(-((.((.(.....((((((((((((((((.(((....((....))..))).....)))).)))))))).))))..).)).))).---...-----..--------- ( -25.60)
>DroSec_CAF1 32702 94 - 1
CAGAU-UCUGCGGUCACACCCAAGUUUGGCAACCAGCGAAGAGCCAGCUCAGCG-AAAAGGGUUAGCCAAACUCUGGGAUCUGCCGAAG---UAUA---UGG---------
((...-.((.((((....((((((((((((((((..((..(((....)))..))-.....)))).)))))))).))))....)))).))---....---)).--------- ( -35.60)
>DroSim_CAF1 39065 94 - 1
CAGAU-UCAGCCGUCACACCCAAGUUUGGCAACCAGCGAAGAGCCAGCUCAGCG-AAAAAGGUUAGCCAAACUCUGGGAUCUGCCAAAA---UAUA---UGG---------
(((((-...(......).((((((((((((((((..((..(((....)))..))-.....)))).)))))))).)))))))))......---....---...--------- ( -28.80)
>DroEre_CAF1 33624 90 - 1
CAGAA-UCAGCCGUCACACCCAAGUUGGGCAACUAGCUAAGAGCCAACUCUGCG-GAAAAGGUUAGCCAAAGUUUGGGAUCUGCCAAAA----------UAG---------
((((.-((((((((........((((((....)))))).((((....)))))))-)....((....)).....))))..))))......----------...--------- ( -21.50)
>DroYak_CAF1 39483 110 - 1
CAGAAUUCAGCCGUCACACCCAAGUUUGGCAACUAGCAAAGAGCCAACUCUGCG-GCAAAGGUUAGCCAAAGUUUGGCAUCUGCCCAAUGGAUGGAUAGUAGUGGUCCAAU
.........((((..((..(((((((((((((((.((..((((....))))...-))...)))).)))))).)))))(((((.......)))))....))..))))..... ( -30.90)
>consensus
CAGAU_UCAGCCGUCACACCCAAGUUUGGCAACUAGCGAAGAGCCAACUCAGCG_AAAAAGGUUAGCCAAACUCUGGGAUCUGCCAAAA___UAUA___UAG_________
((((.....(......).((((((((((((((((.((...(((....))).)).......)))).)))))))).)))).))))............................ (-19.28 = -20.04 +   0.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:22 2006