| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 13,720,299 – 13,720,391 |
| Length | 92 |
| Max. P | 0.650560 |
| Location | 13,720,299 – 13,720,391 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 81.41 |
| Mean single sequence MFE | -30.80 |
| Consensus MFE | -17.04 |
| Energy contribution | -18.71 |
| Covariance contribution | 1.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.28 |
| Structure conservation index | 0.55 |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.650560 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13720299 92 + 22224390 CUAUAGCCUAAUGAGGUUUUGGCCUAAGACUGCA-GUAACCUCGCUUCUGGCGAUGUG--CGCGUGAGUCAACUCACGACAAAUA--UAUCGCAUCU .....(((...(((((((...((........)).-..))))))).....)))((((((--..((((((....)))))).......--...)))))). ( -29.20) >DroSec_CAF1 31392 92 + 1 CUAUAGCCUAAUGAGGUUUUGGCCUAAGACUGCG-GUAACCUCGCUCCUGGCGAUGUG--CGCGUGAGCCAACUCACGGCAAAUA--UAUCGAAUCC .....(((...(((((((.(.((........)).-).))))))).....)))((((((--(.((((((....)))))))))....--))))...... ( -29.10) >DroSim_CAF1 37748 92 + 1 CUAUAGCCUAAUGAGGUUUUGGCCUAAGACUGCG-CUAACCUCGCUCCUGGCGAUGUG--CGCGUGAGCCAACUCACGGCAAAUA--UAUCGAAUCC .....(((...((((((..(((((.......).)-))))))))).....)))((((((--(.((((((....)))))))))....--))))...... ( -28.60) >DroEre_CAF1 32227 93 + 1 CUAUAGCCUAAUGAGGUUUUGGCCUAAGACGGCAAGUAACCUCGCUCCUGGCGAUGUG--CGCGUGAGGAAACUCACGCGCGAUA--UAUCGCAACU ............((((((...(((......)))....)))))).......((((((((--((((((((....)))))))))...)--)))))).... ( -43.60) >DroYak_CAF1 38072 93 + 1 CUAUAGCCUAAUGAGGUUUUGGCCUAAGACUGCAAGUAACCUCGCUGCUGGCGAUGUG--UGCGUGAGCUAAAUCACGGGAAAUA--UAUCGAAACA .....(((...(((((((...((........))....))))))).....)))((((((--(.(((((......)))))....)))--))))...... ( -26.80) >DroAna_CAF1 33733 91 + 1 UAGUGGCCUAAUGAGGUUUUGGCCUAAGACUGGC-CUAACCUCGAUGGAGUAGAGGUGGCAGCGUGAGAGCAGUAA---GCGAUACUAAUCGAUA-- ..((.((((..(((((((..((((.......)))-).))))))).........)))).))...((....)).....---.((((....))))...-- ( -27.50) >consensus CUAUAGCCUAAUGAGGUUUUGGCCUAAGACUGCA_GUAACCUCGCUCCUGGCGAUGUG__CGCGUGAGCCAACUCACGGCAAAUA__UAUCGAAACC .....(((...(((((((...((........))....))))))).....)))((((......((((((....)))))).........))))...... (-17.04 = -18.71 + 1.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:21 2006