Locus 5252

Sequence ID X_DroMel_CAF1
Location 13,712,673 – 13,712,763
Length 90
Max. P 0.932533
window8511

overview

Window 1

Location 13,712,673 – 13,712,763
Length 90
Sequences 3
Columns 91
Reading direction reverse
Mean pairwise identity 75.09
Mean single sequence MFE -28.80
Consensus MFE -16.39
Energy contribution -19.37
Covariance contribution 2.98
Combinations/Pair 1.19
Mean z-score -2.16
Structure conservation index 0.57
SVM decision value 1.22
SVM RNA-class probability 0.932533
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13712673 90 - 22224390
CAACUUUUGACUGAAUGCAUUUAGGUAUUGUCGGUGG-GUUUGGUUCUUGAGGGGAGCGCGUUCCCCUUUCACCCGGAACCCCAUUCACCC
........(((..(((((......))))))))(((((-((..((((((.((((((((....))))))))......))))))..))))))). ( -32.20)
>DroSec_CAF1 24351 91 - 1
CAACUUUUGACUGAAUGCAUUUAGGUAUUGUCGCUGGGGUUUGGGCCUUGAGGGGGAGCCCUCCCCCUUUCACCCGGCACCCCAUCCACCC
........(((..(((((......))))))))..(((((((((((....((((((((....))))))))...))))).))))))....... ( -36.80)
>DroEre_CAF1 24527 74 - 1
CAACUUUUGACUGAAUGCAUUUAGGUAUUGUCGGUGGAGUU-GGGC----------------CCCUCUUUCACUCACAGCCCCAACCGCCC
........(((..(((((......))))))))(((((....-((((----------------................))))...))))). ( -17.39)
>consensus
CAACUUUUGACUGAAUGCAUUUAGGUAUUGUCGGUGG_GUUUGGGCCUUGAGGGG____C_UCCCCCUUUCACCCGGAACCCCAUCCACCC
........(((..(((((......))))))))(((((.((((.((....((((((((....))))))))....)).)))).))).)).... (-16.39 = -19.37 +   2.98)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:20 2006