Locus 5251

Sequence ID X_DroMel_CAF1
Location 13,710,454 – 13,710,558
Length 104
Max. P 0.936298
window8510

overview

Window 0

Location 13,710,454 – 13,710,558
Length 104
Sequences 5
Columns 113
Reading direction reverse
Mean pairwise identity 77.11
Mean single sequence MFE -23.60
Consensus MFE -6.00
Energy contribution -5.60
Covariance contribution -0.40
Combinations/Pair 1.25
Mean z-score -2.20
Structure conservation index 0.25
SVM decision value 1.25
SVM RNA-class probability 0.936298
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13710454 104 - 22224390
UUUUG-GGAAAAUCUGAGAAAAUCGAGGAGAAUCGG-UGAAAAUCGG-AGUAGUUCGAAAGGAUGU------GGAGGUGUAGUGGUGCAGAGGACCAGAUAAUCACUCCAUUU
(((((-((....(((((....(((((......))))-).....))))-)....)))))))....((------((((.(((..((((.(...).)))).)))....)))))).. ( -27.20)
>DroSec_CAF1 22158 86 - 1
AUUUG-GGAAAAUCUGAGAAAA----------UCGG-UGAAAAUCGG-GGUAGCUCGAAAGGAAGU------GGAGGUGUG--------GAGGACCAGAUAAUCACUCCAUUA
.....-........((((....----------((((-(....)))))-.....))))...(((.((------((..((.((--------(....))).))..))))))).... ( -21.70)
>DroSim_CAF1 29609 86 - 1
AUUUG-GGAAAAUCUGAGAAAA----------UCGG-UGAAAAUCGG-GGUAGCUCGAAAGGAAGU------GGAGGUGUG--------GAGGACCAGAUAAUCACUCCAUUA
.....-........((((....----------((((-(....)))))-.....))))...(((.((------((..((.((--------(....))).))..))))))).... ( -21.70)
>DroEre_CAF1 22373 102 - 1
UUGUG-GGAAAAUCUGAGAAAAUCGGAGAAAAUCGA-GCAAACUCGG-GGAAGUUCAAAAGGAAGCGCAGAAGGAGGUGCA--------GAGGGCCAGAUAAUCACUCCAUUA
..(((-((....(((((.....)))))((..(((..-((...(((..-.....(((.....)))((((........)))).--------))).))..)))..))..))))).. ( -22.40)
>DroYak_CAF1 28196 99 - 1
AUUUGGGGAAAAUCGAAGAAAAUCGGGGAAACUGGGGGGAAACUCGGGGGAAGCUCGAGAGGAAGU------GGAGGUGCA--------GAGGCCCAGAUAAUCACUCCAUUA
...(((((....((((......)))).....(((((......((((((.....)))))).....((------......)).--------....))))).......)))))... ( -25.00)
>consensus
AUUUG_GGAAAAUCUGAGAAAAUCG__GA_A_UCGG_UGAAAAUCGG_GGUAGCUCGAAAGGAAGU______GGAGGUGUA________GAGGACCAGAUAAUCACUCCAUUA
......(((...(((..................(((.(....))))........((....))..........)))(((.(...........).)))..........))).... ( -6.00 =  -5.60 +  -0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:19 2006