Locus 5249

Sequence ID X_DroMel_CAF1
Location 13,704,254 – 13,704,374
Length 120
Max. P 0.783382
window8507 window8508

overview

Window 7

Location 13,704,254 – 13,704,374
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 98.11
Mean single sequence MFE -33.00
Consensus MFE -31.52
Energy contribution -31.55
Covariance contribution 0.03
Combinations/Pair 1.03
Mean z-score -0.89
Structure conservation index 0.96
SVM decision value 0.38
SVM RNA-class probability 0.710830
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13704254 120 + 22224390
ACCGGUGUGCACGCGACAAUGAUCUUUCAUGUGGUGGCGCAGCUUAAAUGCUUUGCCACAAAACUCACAUUUAAAUGGUCGAUCACCUGUAUGUACCGACAAAUGCGUGAUCAGUGAUGU
........(((((((((.((((....))))((.((((((.(((......))).))))))...)).............)))((((((.(((.(((....))).))).)))))).))).))) ( -34.00)
>DroPse_CAF1 18172 120 + 1
ACCGGUGUGGACGCGACAAUGAUCUUUCAUGUGGUGGCGCAGCUUAAACGCUUUGCCACAAAACUCACAUUUAAAUGGUCGAUCACCUGUAUGUACCGACAAAUGCGUGAUCAGUGAUGU
((((((((((.(((....((((....)))))))((((((.(((......))).)))))).....)))))).....)))).((((((.(((.(((....))).))).))))))........ ( -33.00)
>DroGri_CAF1 21618 120 + 1
ACCCGUGUGCACGCGACAAUGAUCUUUCAUGUGGUGGCGCAGCUUAAACGCUUUGCCACAAAACUCACAUUUAAAUGGUCGAUCACCUGUAUGUACCGACAAAUGCGUGAUCAGUGAUGU
........(((((((((.((((....))))((.((((((.(((......))).))))))...)).............)))((((((.(((.(((....))).))).)))))).))).))) ( -33.40)
>DroWil_CAF1 21619 120 + 1
ACCUGUGUGCACGCGACAAUGGUCUUUCAUGUGAUGGCGCAGCUUAAACGCUUUGCCACAAAACUCACAUUUAAAUGGUCGAUCACCUGUAUGUACCGACAAAUGCGUGAUCAGUGAUGU
.((((....(((((((((.(((((..(((((((((((((.(((......))).)))))......)))))......)))..)))))..))).(((....)))..))))))..))).).... ( -31.20)
>DroMoj_CAF1 20348 120 + 1
ACCCGUGUGCACGCGACAAUGAUCUUUCAUGUGGUGGCGCAGCUUAAACGCUUUGCCACAAAACUCACAUUUAAAUGGUCGAUCACCUGUAUGUACCGACAAAUGCGUGAUCAGUGAUGU
........(((((((((.((((....))))((.((((((.(((......))).))))))...)).............)))((((((.(((.(((....))).))).)))))).))).))) ( -33.40)
>DroPer_CAF1 18106 120 + 1
ACCGGUGUGGACGCGACAAUGAUCUUUCAUGUGGUGGCGCAGCUUAAACGCUUUGCCACAAAACUCACAUUUAAAUGGUCGAUCACCUGUAUGUACCGACAAAUGCGUGAUCAGUGAUGU
((((((((((.(((....((((....)))))))((((((.(((......))).)))))).....)))))).....)))).((((((.(((.(((....))).))).))))))........ ( -33.00)
>consensus
ACCGGUGUGCACGCGACAAUGAUCUUUCAUGUGGUGGCGCAGCUUAAACGCUUUGCCACAAAACUCACAUUUAAAUGGUCGAUCACCUGUAUGUACCGACAAAUGCGUGAUCAGUGAUGU
...........((((((.((((....))))((.((((((.(((......))).))))))...)).............)))((((((.(((.(((....))).))).)))))).))).... (-31.52 = -31.55 +   0.03)

alignment

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secondary structure

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dotplot

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Window 8

Location 13,704,254 – 13,704,374
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 98.11
Mean single sequence MFE -33.70
Consensus MFE -31.37
Energy contribution -31.40
Covariance contribution 0.03
Combinations/Pair 1.03
Mean z-score -1.10
Structure conservation index 0.93
SVM decision value 0.56
SVM RNA-class probability 0.783382
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13704254 120 - 22224390
ACAUCACUGAUCACGCAUUUGUCGGUACAUACAGGUGAUCGACCAUUUAAAUGUGAGUUUUGUGGCAAAGCAUUUAAGCUGCGCCACCACAUGAAAGAUCAUUGUCGCGUGCACACCGGU
....((.(((((.(((((((((((((.(((....))))))))).....)))))))......(((((..(((......)))..))))).........))))).))(((.((....))))). ( -33.00)
>DroPse_CAF1 18172 120 - 1
ACAUCACUGAUCACGCAUUUGUCGGUACAUACAGGUGAUCGACCAUUUAAAUGUGAGUUUUGUGGCAAAGCGUUUAAGCUGCGCCACCACAUGAAAGAUCAUUGUCGCGUCCACACCGGU
....((.(((((.(((((((((((((.(((....))))))))).....)))))))......(((((..(((......)))..))))).........))))).))(((.((....))))). ( -32.60)
>DroGri_CAF1 21618 120 - 1
ACAUCACUGAUCACGCAUUUGUCGGUACAUACAGGUGAUCGACCAUUUAAAUGUGAGUUUUGUGGCAAAGCGUUUAAGCUGCGCCACCACAUGAAAGAUCAUUGUCGCGUGCACACGGGU
....((.(((((.(((((((((((((.(((....))))))))).....)))))))......(((((..(((......)))..))))).........))))).)).(.(((....))).). ( -34.80)
>DroWil_CAF1 21619 120 - 1
ACAUCACUGAUCACGCAUUUGUCGGUACAUACAGGUGAUCGACCAUUUAAAUGUGAGUUUUGUGGCAAAGCGUUUAAGCUGCGCCAUCACAUGAAAGACCAUUGUCGCGUGCACACAGGU
......(((..(((((....((((((.(((....))))))))).......((((((......((((..(((......)))..))))))))))....(((....))))))))....))).. ( -34.40)
>DroMoj_CAF1 20348 120 - 1
ACAUCACUGAUCACGCAUUUGUCGGUACAUACAGGUGAUCGACCAUUUAAAUGUGAGUUUUGUGGCAAAGCGUUUAAGCUGCGCCACCACAUGAAAGAUCAUUGUCGCGUGCACACGGGU
....((.(((((.(((((((((((((.(((....))))))))).....)))))))......(((((..(((......)))..))))).........))))).)).(.(((....))).). ( -34.80)
>DroPer_CAF1 18106 120 - 1
ACAUCACUGAUCACGCAUUUGUCGGUACAUACAGGUGAUCGACCAUUUAAAUGUGAGUUUUGUGGCAAAGCGUUUAAGCUGCGCCACCACAUGAAAGAUCAUUGUCGCGUCCACACCGGU
....((.(((((.(((((((((((((.(((....))))))))).....)))))))......(((((..(((......)))..))))).........))))).))(((.((....))))). ( -32.60)
>consensus
ACAUCACUGAUCACGCAUUUGUCGGUACAUACAGGUGAUCGACCAUUUAAAUGUGAGUUUUGUGGCAAAGCGUUUAAGCUGCGCCACCACAUGAAAGAUCAUUGUCGCGUGCACACCGGU
.(..((.(((((.(((((((((((((.(((....))))))))).....)))))))......(((((..(((......)))..))))).........))))).))..)............. (-31.37 = -31.40 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:18 2006