Locus 5247

Sequence ID X_DroMel_CAF1
Location 13,687,307 – 13,687,425
Length 118
Max. P 0.645387
window8504

overview

Window 4

Location 13,687,307 – 13,687,425
Length 118
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 88.27
Mean single sequence MFE -19.23
Consensus MFE -16.23
Energy contribution -17.07
Covariance contribution 0.83
Combinations/Pair 1.00
Mean z-score -1.87
Structure conservation index 0.84
SVM decision value 0.23
SVM RNA-class probability 0.645387
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13687307 118 - 22224390
ACCGAUCUAUAGAAGCUAACUAGCAACAAUUUGUACAAAACAAAC--AAAAGCCGAGCAAACGAGAGGAAACUAACUUUGCAAGGAUCAAUGCAAUAACUGAGUAAACUCUGUUACCUAC
...(((((......(((....))).....(((((.....))))).--.........(((((.(..((....))..))))))..))))).......((((.(((....))).))))..... ( -22.50)
>DroSim_CAF1 4504 118 - 1
ACCGAUCUAUAGAAGCUAACUAGCAACAAUUUGUACAAAACAAAC--AAAAGCCGAGCAAACGAGAGGAAACUAACUUUGCAAGGAUCAAUGCAAUAACUGAGUAAACUCUGUUACCUAC
...(((((......(((....))).....(((((.....))))).--.........(((((.(..((....))..))))))..))))).......((((.(((....))).))))..... ( -22.50)
>DroYak_CAF1 4759 106 - 1
ACCGAUCUAUAGAAGCUAACUAGCAACAAUUUGUACAAAACUAAGUAAAAAACCAAGCAA--------------ACUUUGCAAGGAUCAAUGCAAUAACUAAGUAAACUCUGUUACCUAC
...(((((......(((....)))................................(((.--------------....)))..))))).......((((..((....))..))))..... ( -12.70)
>consensus
ACCGAUCUAUAGAAGCUAACUAGCAACAAUUUGUACAAAACAAAC__AAAAGCCGAGCAAACGAGAGGAAACUAACUUUGCAAGGAUCAAUGCAAUAACUGAGUAAACUCUGUUACCUAC
...(((((......(((....)))................................(((((....((....))...)))))..))))).......((((.(((....))).))))..... (-16.23 = -17.07 +   0.83)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:14 2006