Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,514,067 – 1,514,179 |
Length | 112 |
Max. P | 0.548810 |
Location | 1,514,067 – 1,514,179 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 89.78 |
Mean single sequence MFE | -37.66 |
Consensus MFE | -27.42 |
Energy contribution | -28.10 |
Covariance contribution | 0.68 |
Combinations/Pair | 1.09 |
Mean z-score | -1.70 |
Structure conservation index | 0.73 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.548810 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1514067 112 - 22224390 CUGUUCUCCUGCUAAGAUACCUUUUUAGGACC-------CGUCGAGUUUCUGGUGGCGGCGAAUGCAUGCAUGAGCCAGUUACCAACCAAACCC-CUGACGGUCUGAGAACGCGUGAUUU ..((((((...((((((.....))))))((((-------.((((.((((.((((((((((..(((....)))..))).)))))))...))))..-.)))))))).))))))......... ( -38.20) >DroSec_CAF1 3550 112 - 1 CUGUUCUCCUGCUAAGAUACCUUUUUAGGACC-------CGUCGAGUUUCUGGUGGCGGCGUAUGCAUGCAUGAGCCAGUUACCAACCAAACCC-CUGACGGUCUGAGAACGCGUGAUUU ..((((((...((((((.....))))))((((-------.((((.((((.((((((((((.((((....)))).))).)))))))...))))..-.)))))))).))))))......... ( -38.10) >DroSim_CAF1 4773 112 - 1 CUGUUCUCCUGCUAAGAUACCUUUUUAGGACC-------CGUCGAGUUUCUGGUGGCGGCGUAUGCAUGCAUGAGCCAGUUACCAACCAAACCC-CUGACGGUCUGAGAACGCGUGAUUU ..((((((...((((((.....))))))((((-------.((((.((((.((((((((((.((((....)))).))).)))))))...))))..-.)))))))).))))))......... ( -38.10) >DroEre_CAF1 3574 113 - 1 CUGUUUUCCUGCUAAGAUACCUUUUUAGGAGC-------CGUCGAGUUUCUGGUGGCGGCGAAUGCAUGCAUGAGCCACUUACCAACUAAACUCGCCGGCGGUCUGAGAACGCACGAUUU ..((((((..(((......(((....))).((-------((.(((((((.((((((.(((..(((....)))..))).).)))))...))))))).)))))))..))))))......... ( -41.40) >DroYak_CAF1 5092 120 - 1 CUCUUUUCCUGCUAAGAUACCUUUUUAGGACCGAGCUUAGGUCGAGUUUCUGGUGGCGGCGUAUGCAUGCUUGAGCCAGUAACCAACUAAACUCGACGACGGUCUAAUAACGCGCCAUUU (((...(((((..(((....)))..)))))..))).....(((((((((.((((.(((((....(....)....))).)).))))...)))))))))...(((..........))).... ( -32.50) >consensus CUGUUCUCCUGCUAAGAUACCUUUUUAGGACC_______CGUCGAGUUUCUGGUGGCGGCGUAUGCAUGCAUGAGCCAGUUACCAACCAAACCC_CUGACGGUCUGAGAACGCGUGAUUU ..((((((..(((......(((....)))...........((((.((((.((((((((((..(((....)))..))).)))))))...))))....)))))))..))))))......... (-27.42 = -28.10 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:48 2006