Locus 5239

Sequence ID X_DroMel_CAF1
Location 13,669,808 – 13,669,905
Length 97
Max. P 0.990724
window8488

overview

Window 8

Location 13,669,808 – 13,669,905
Length 97
Sequences 3
Columns 98
Reading direction forward
Mean pairwise identity 72.16
Mean single sequence MFE -18.77
Consensus MFE -12.62
Energy contribution -12.07
Covariance contribution -0.55
Combinations/Pair 1.22
Mean z-score -1.80
Structure conservation index 0.67
SVM decision value 2.23
SVM RNA-class probability 0.990724
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13669808 97 + 22224390
CUAGAUUGGCAGAUAAUGCCACUCCAAAAUUGUCAAGUCUUCUGCAACAUUUGUAUAUAUAUGUAUAUAAAAACCCGUCACUUGGGGAUUUCCC-CUU
...(((.((((((..((...((.........))...))..)))))....(((((((((....)))))))))...).)))....((((....)))-).. ( -21.40)
>DroSec_CAF1 1139 96 + 1
CUAGAUGGGCAGAAAAUGCCCCUCCAAAAUUGUCAAGCCUUCUGCAAUAUCUGAAUAUAUA--UAUAUAAAAACCCGUCACUUGGGGAUUUCCCUCUU
...(((((((((((...((.................)).))))))..........((((..--..)))).....)))))....((((....))))... ( -17.93)
>DroEre_CAF1 1161 73 + 1
CUAGAUGGGCAGAUAGUGCCUCA--------------------ACAACAUCUUCAGCUACA----UAUAAAAACCCGUCACUUGGGGAUUUCCC-CUC
...((((((...(((((((....--------------------............)).)).----))).....))))))....((((....)))-).. ( -16.99)
>consensus
CUAGAUGGGCAGAUAAUGCCACUCCAAAAUUGUCAAG_CUUCUGCAACAUCUGAAUAUAUA__UAUAUAAAAACCCGUCACUUGGGGAUUUCCC_CUU
......(((((.....)))))....................................................((((.....))))............ (-12.62 = -12.07 +  -0.55)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:00 2006