Locus 5237

Sequence ID X_DroMel_CAF1
Location 13,662,251 – 13,662,364
Length 113
Max. P 0.826503
window8485

overview

Window 5

Location 13,662,251 – 13,662,364
Length 113
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 80.82
Mean single sequence MFE -24.83
Consensus MFE -15.14
Energy contribution -16.95
Covariance contribution 1.81
Combinations/Pair 1.19
Mean z-score -2.13
Structure conservation index 0.61
SVM decision value 0.70
SVM RNA-class probability 0.826503
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13662251 113 - 22224390
UACAUAAACAUGUAUUUCGCCUAGCAUGCAACAUAUUAU----AAUAUUUCAGUAUCUAUGUAUGCAUACUUUUGCCUACAUGGAUACAUUCCAUCACUA-AACAA--CCAUCAAUUCGA
........(((((..........)))))...........----.........(((((((((((.(((......))).)))))))))))............-.....--............ ( -21.50)
>DroSec_CAF1 5228 117 - 1
-GUAUAGACAUGUAUUUCGCCUGGCUUGGUAUAGAAUGUGAAAAAUAUUUCAGUAUCUAUGUAUGCAUGCUUCUGCCUACAUGGAUACAUUCCAUCACUGCCACGA--CCAUCCAUUCGA
-.....((.(((....(((..((((.((((...((((.(((((....)))))(((((((((((.(((......))).))))))))))))))).))))..)))))))--.....))))).. ( -30.60)
>DroEre_CAF1 5356 114 - 1
-GUAUAGACAUGUAUUUCGCCUGGCUUGGUAUAAAAUGCUAUAAAUAUUUGGGUAUCUUUGUG----UGCUUUCACCUACAUGGAUACAUUCCAUCACUG-CCCAAAGCCAUCUAUUCGA
-(.(((((...((((((.(((......)))...))))))........((((((((.....(((----......)))....(((((.....)))))...))-))))))....))))).).. ( -24.80)
>DroYak_CAF1 5139 112 - 1
-UUAUAGACAUGUAUUUCGCCUGGCUUGGUAUAAAAUGCCAUAAAUAUUUGGGUAUCUUUGUG----UGCUUUCACCUACAUGGAUACAUUCCAUCACUG-CCCGA--CCAUCCAUUCGA
-...............(((..(((..((((((...)))))).......(((((((.....(((----......)))....(((((.....)))))...))-)))))--....)))..))) ( -22.40)
>consensus
_GUAUAGACAUGUAUUUCGCCUGGCUUGGUAUAAAAUGC_AUAAAUAUUUCAGUAUCUAUGUA____UGCUUUCACCUACAUGGAUACAUUCCAUCACUG_CACAA__CCAUCCAUUCGA
................(((..(((..(((.........(((........)))(((((((((((.(((......))).)))))))))))....................))).)))..))) (-15.14 = -16.95 +   1.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:58 2006