Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 13,660,936 – 13,661,040 |
Length | 104 |
Max. P | 0.830560 |
Location | 13,660,936 – 13,661,040 |
---|---|
Length | 104 |
Sequences | 6 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 77.98 |
Mean single sequence MFE | -33.17 |
Consensus MFE | -24.08 |
Energy contribution | -23.58 |
Covariance contribution | -0.50 |
Combinations/Pair | 1.24 |
Mean z-score | -1.39 |
Structure conservation index | 0.73 |
SVM decision value | 0.71 |
SVM RNA-class probability | 0.830560 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13660936 104 + 22224390 CCCAAUUAGAGUGGGAUAGAAACGAAUGG----GGUGCAGUACGAACCAUUUCCAUGAUCAGAUGGCCACAGAUGGCGCACUUUUCCGCCGUCUGCUGGAAGCCCGAG ((((.......)))).............(----(((..........((((((........))))))((((((((((((........))))))))).)))..))))... ( -33.40) >DroSec_CAF1 3876 104 + 1 CCCAAUUAGAGCGGGAUGGAAACGAAUGA----AGUGCAGUACGUACCAUUUCCAUGAUCAGAUGGCCACAGAUGGCGCACUUUUCCGCCGUCUGCUGGAAGCCCGAG ...........((((((((((....(((.----.((((.....)))))))))))))..........((((((((((((........))))))))).)))...)))).. ( -33.50) >DroEre_CAF1 3934 88 + 1 UCCAUUUAGAGUGGGAUAGAAAC--------------------GCACCAUUUCCAUGAUCAGGUGGCCGCAGAUGGCGCACUUUUCCGCCGUCUGCUGGAAGCCCGAG ..(((...((((((.........--------------------...))))))..))).((.(((..((((((((((((........)))))))))).))..))).)). ( -32.90) >DroWil_CAF1 3857 96 + 1 -ACAGACAGAGAGAUAUAGAGA----------GA-GAGAAUACCAACCAUUUCCAUAAUUAAAUGCCCACAGAUGGCGCAUUUUUCCGCUGUUUGCUGGAAACCCGAG -.(((((((.(.((....(.((----------((-..(........)..)))))......(((((((((....))).)))))).))).))))))).(((....))).. ( -18.10) >DroYak_CAF1 3798 107 + 1 -CCAUUUAGAGUGGGAUGGCAACGAAUGGUACGAAUGCAGUACGAACCAUUUCCAUGAUCAGGUGGCCGCAGAUGGCGCACUUUUCCGCCGUCUGCUGGAAGCCCGAG -((((.....)))).((((....(((((((.((.........)).)))))))))))..((.(((..((((((((((((........)))))))))).))..))).)). ( -40.60) >DroAna_CAF1 3737 100 + 1 -UCAAAUAGAGGGGGAUGGAUA------GAGCGA-GGGAGUACUAACCAUUUCCAUGAUCAGGUGGCCGCAGAUGGCGCACUUUUCCGCCGUUUGCUGGAAGCCCGAG -..........((..((((.((------(.((..-....)).))).))))..))....((.(((..((((((((((((........)))))))))).))..))).)). ( -40.50) >consensus _CCAAUUAGAGUGGGAUAGAAAC_____G____A_UGCAGUACGAACCAUUUCCAUGAUCAGAUGGCCACAGAUGGCGCACUUUUCCGCCGUCUGCUGGAAGCCCGAG ............(((...............................((((((........))))))((((((((((((........))))))))).)))...)))... (-24.08 = -23.58 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:54 2006