Locus 5233

Sequence ID X_DroMel_CAF1
Location 13,660,022 – 13,660,137
Length 115
Max. P 0.506179
window8480

overview

Window 0

Location 13,660,022 – 13,660,137
Length 115
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 86.10
Mean single sequence MFE -28.55
Consensus MFE -19.06
Energy contribution -18.75
Covariance contribution -0.31
Combinations/Pair 1.14
Mean z-score -1.50
Structure conservation index 0.67
SVM decision value -0.05
SVM RNA-class probability 0.506179
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13660022 115 - 22224390
ACAGUUGGCAGCCAUUGUUGGCA-AUACUAUUUUGAUACAAGUAUAUUGAUGUGUUCUUCAUAUGU----AUGUCCUGGGGUGUUCCUGAGACCUCUUGAGGUUUCAAUGCAAUAGCAAA
...(((((((((((....)))).-..........(((((.((.((((..(((((.....)))))..----)))).))...)))))..((((((((....)))))))).)))..))))... ( -28.20)
>DroSec_CAF1 2991 115 - 1
ACAGUUGGCAACCAUUGUUGGCA-AUACUAUUUUGAUACAAGUAUAUUGAUGUGUUUUUCAUAUGU----ACGUCCUGGGGUGUUCCUGAGACCUCUUGAGGUUUCAAUGCAAUAGCAAA
(((((.(....).))))).((.(-(((((.....(((....(((((((((........))).))))----)))))....))))))))((((((((....)))))))).(((....))).. ( -28.10)
>DroEre_CAF1 3071 106 - 1
ACAGUUGGCCGCAAUUGUUGGCA-AUACUAUUUUGAU------AUAUCAAUGUGUUUUUCGUAUGU----AUGUCAUGGGGUGUUCCUGAAACCUCU--AGGUUUCAAAGCAAUAGCA-A
..........((.((((((((.(-(((((....((((------((((..(((.......)))..))----))))))...))))))))(((((((...--.))))))).)))))).)).-. ( -30.10)
>DroYak_CAF1 2948 113 - 1
ACAGUUGGCAGCAAUGGUUGGCAAAUACUAUUUUGAU------AUAUUAAUGUGUUUUUCAUAUGUAUGUAUGCCCUAUGGUGUUCCUGAGACCUCUUGAGGUUUCAAAGCAAUAGCA-A
....(((.((((....)))).)))(((((((...(((------((((..(((((.....)))))..)))))).)...)))))))...((((((((....))))))))..((....)).-. ( -27.80)
>consensus
ACAGUUGGCAGCAAUUGUUGGCA_AUACUAUUUUGAU______AUAUUAAUGUGUUUUUCAUAUGU____AUGUCCUGGGGUGUUCCUGAGACCUCUUGAGGUUUCAAAGCAAUAGCA_A
...((..((.......))..))..(((((....(((((......)))))(((((.....)))))...............)))))...((((((((....))))))))..((....))... (-19.06 = -18.75 +  -0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:53 2006