| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 13,653,936 – 13,654,030 |
| Length | 94 |
| Max. P | 0.959876 |
| Location | 13,653,936 – 13,654,030 |
|---|---|
| Length | 94 |
| Sequences | 4 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 79.54 |
| Mean single sequence MFE | -17.07 |
| Consensus MFE | -11.81 |
| Energy contribution | -11.81 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.21 |
| Structure conservation index | 0.69 |
| SVM decision value | 1.51 |
| SVM RNA-class probability | 0.959876 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13653936 94 + 22224390 AACUAUUGCUUUUAACUGG-CCAAAAAUUCAGGCAAAAAUUAGAGAAA-AAAAAAAAAGAAAUGAAAGGAAACAGGUGCUCC-CAAGCACUUUCUCC ..................(-((.........)))........((((((-..................(....)..(((((..-..))))))))))). ( -16.30) >DroSim_CAF1 6211 95 + 1 AACUAUUGCUUUUAACUGG-CCAAAAAUCCAGGCAAAAAUGAAAGAAGAAACAAAAAAGAAAAGAAAGGAAACAGGUGCUCC-CAAGCACUUUCUCC ..((.((..((((..((((-........))))..))))..)).)).................((((((....)..(((((..-..)))))))))).. ( -16.50) >DroEre_CAF1 7232 85 + 1 AGCUGUUGCUUUUAACAGGCCAAAAAAUCCAGGCAAAAA--AAAGAAGA---------AAAAUAAAAGGAAACAGGUGCUCC-CAAGCACUUUCUCC ..((((((....))))))(((..........))).....--.....(((---------((.......(....)..(((((..-..)))))))))).. ( -17.10) >DroYak_CAF1 6284 84 + 1 AACUGUUGCUUUCAGCUUGGCCAAAAAUCCAGGCAAAA----AAUAAGU---------CAAAGAAAUGGAAACAGGUGCUCCCCAAGCACUUUCUCC ..............((((((........))))))....----.......---------...((((.((....))((((((.....)))))))))).. ( -18.40) >consensus AACUAUUGCUUUUAACUGG_CCAAAAAUCCAGGCAAAAA__AAAGAAGA_________GAAAUAAAAGGAAACAGGUGCUCC_CAAGCACUUUCUCC .....((((((...................))))))...............................(((...(((((((.....)))))))..))) (-11.81 = -11.81 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:52 2006