Locus 5231

Sequence ID X_DroMel_CAF1
Location 13,653,052 – 13,653,158
Length 106
Max. P 0.661370
window8478

overview

Window 8

Location 13,653,052 – 13,653,158
Length 106
Sequences 6
Columns 111
Reading direction reverse
Mean pairwise identity 81.86
Mean single sequence MFE -38.07
Consensus MFE -22.08
Energy contribution -22.87
Covariance contribution 0.78
Combinations/Pair 1.16
Mean z-score -2.28
Structure conservation index 0.58
SVM decision value 0.27
SVM RNA-class probability 0.661370
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13653052 106 - 22224390
UUAGCGCCUUUUGUUGCAA-CUGAACGCCAAGCGAUUGUU--GCGGCUUCAGUUGUGCUAAGUUGAGGAAAAUGCGCUUCUUUGUUGUCACUUCAACG--GCAGCAAAGAG
..(((((.((((.((((((-(((((.(((.(((....)))--..)))))))))))).(......))).)))).)))))(((((((((((........)--)))))))))). ( -39.40)
>DroSec_CAF1 5413 108 - 1
UAAGCGCCUUUUGUUGCAA-CUGAACGCCAAGCGAUUGUU--GCGGCUUCAGUUGUGCUGAGUUGAGGAAAAUGCGCUUCUUUGUUGUCACUUCAACGGGGCAGCAAAGAG
..(((((.((((.((((((-(((((.(((.(((....)))--..)))))))))))).(......))).)))).)))))(((((((((((.((.....))))))))))))). ( -39.70)
>DroSim_CAF1 5387 108 - 1
UUAGCGCCUUUUGUUGCAA-CUGAACGCCAAGCGAUUGUU--GCGGCUUCAGUUGUGCUGAGUUGAGGAAAAUGCGCUUCUUUGUUGUCACUUCAACGGGGCAGCAAAGAG
..(((((.((((.((((((-(((((.(((.(((....)))--..)))))))))))).(......))).)))).)))))(((((((((((.((.....))))))))))))). ( -39.60)
>DroEre_CAF1 6277 108 - 1
UUAGCGCCUUUUGUUGCAU-CUGAACGCCAAGCGAUUGUUUGGCGGCUUCAGUUGUGCUGAGUUGAGGAAAAUGCGCUUCUUUGUUGUCACUUCAACU--GCAACAAAGAG
..(((((.((((.((((((-((((.((((((((....))))))))...))))..)))).......)).)))).)))))((((((((((..........--)))))))))). ( -37.31)
>DroYak_CAF1 5353 107 - 1
UUAGCGCCUUUUGUUGCAU-CUGAACGCCAAGCGAUUGUUUGG-GGCUUCAGUUGUGCUGAGUUGAGGAAAAUGCGCUUCUUUGUUGUCACUUCAGCG--GCAGCAAAGAG
..(((((.((((.((((((-((((((.((((((....))))))-.).)))))..)))).......)).)))).)))))(((((((((((.(....).)--)))))))))). ( -39.31)
>DroAna_CAF1 4640 101 - 1
UCAGGCCCUUGUUCGGCGCCCACAACGCC-GGCGGCUGUC--GGCCCUCGAGAU-----GCCCCAAGGAAAGUGCGACUCUCUGUUGCCUCUUGAGGCAAGCAACAAAG--
...(((((......)).)))......(((-(((....)))--)))((((((((.-----.((....))...(.(((((.....))))))))))))))............-- ( -33.10)
>consensus
UUAGCGCCUUUUGUUGCAA_CUGAACGCCAAGCGAUUGUU__GCGGCUUCAGUUGUGCUGAGUUGAGGAAAAUGCGCUUCUUUGUUGUCACUUCAACG__GCAGCAAAGAG
...(((((((.....(((..(((((.(((.(((....)))....))))))))...)))......))))....)))...((((((((((............)))))))))). (-22.08 = -22.87 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:51 2006