Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 13,649,944 – 13,650,038 |
Length | 94 |
Max. P | 0.508298 |
Location | 13,649,944 – 13,650,038 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 90.56 |
Mean single sequence MFE | -30.10 |
Consensus MFE | -23.44 |
Energy contribution | -24.04 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.00 |
Mean z-score | -1.42 |
Structure conservation index | 0.78 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.508298 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13649944 94 - 22224390 GCACAGUGCCAUAUAAACGCACAUUGAUUGCCGCCUGGCGUUGGAGCUUAUUUGAAGUUAAGCCGGCUGUCGACGCCAGCAGAAAUGGUUUUGC ...(((.(((((......(((.......))).((.(((((((((((((..((((....))))..)))).)))))))))))....))))).))). ( -28.80) >DroSec_CAF1 2260 94 - 1 GCACAGUGCCAUAUAAACGCACAUUGAUUGCCGCCUGGCGUUGGGGCUUAUUUGAAGUUAAGCCGGCUAUCGACGCCAGCAGAAAUGGUUGUGC (((((..(((((......(((.......))).((.(((((((((((((((........)))))).....)))))))))))....)))))))))) ( -35.10) >DroSim_CAF1 2245 94 - 1 GCACAGUGCCAUAUAAACGCACAUUGAUUGCCGCCUGGCGUUGGGGCUUAUUUGAAGUUAAGCCGGCUAUCGACGCCAGCAGAAAUGCUUGUGC (((((((((.........)))).............(((((((((((((((........)))))).....)))))))))(((....))).))))) ( -33.80) >DroEre_CAF1 3256 86 - 1 GCACAGUCCCAUAUAAACGCACAUUAAUUG---CCUGGCGUUGGGGCUUAUUUGAAGUUAAGCCGGCUGUCGACGCCAGCAGAAACGGC----- ........((........(((.......))---)((((((((((((((((........)))))).....)))))))))).......)).----- ( -24.70) >DroYak_CAF1 2387 86 - 1 GCACAGUGCCAUAUAAACGCACAUUGAUUG---CCUGGCGUUGGGGCCUAUUUGAAGUUAAGCCGGCUGUCGACGCCAGCAGAAACGGC----- ((...((((.........)))).....(((---(.(((((((((((((..((((....))))..)))).))))))))))))).....))----- ( -28.10) >consensus GCACAGUGCCAUAUAAACGCACAUUGAUUGCCGCCUGGCGUUGGGGCUUAUUUGAAGUUAAGCCGGCUGUCGACGCCAGCAGAAAUGGUU_UGC .....((((.........))))............((((((((((((((((........)))))).....))))))))))............... (-23.44 = -24.04 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:50 2006