Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,513,485 – 1,513,601 |
Length | 116 |
Max. P | 0.987035 |
Location | 1,513,485 – 1,513,601 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 90.90 |
Mean single sequence MFE | -14.44 |
Consensus MFE | -13.34 |
Energy contribution | -13.38 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.05 |
Mean z-score | -1.74 |
Structure conservation index | 0.92 |
SVM decision value | 2.06 |
SVM RNA-class probability | 0.987035 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1513485 116 + 22224390 AGUUU----CUCAUUUACUUAUCGCUUUCGUUUCGUUAGAUUUUUCUAAUUAACACACGAAAGAAACCCAAAAAGAAAAACUAAACCAAUCUAACCAACCGAAAUGCAAAUUAAAAUCAC .....----..............(((((((.((.(((((((((((((..........(....)..........))))).........)))))))).)).))))).))............. ( -16.05) >DroSec_CAF1 2969 116 + 1 AGUUU----CUCAUUUACUUAACGCUUUCGUUUCGUUAGAUUUCCCUAAUUAAUACACGAAGGAAACCCAAAAAGAAAAACUAAACCAAUCUAACAAACCGAAAUGCAAAUUAAAGUCAC .....----..............(((((((.((.((((((((...................((....))....((.....)).....)))))))).)).))))).))............. ( -14.40) >DroSim_CAF1 4199 116 + 1 AGUUU----CUCAUUUACUUAACGCUUUCGUUUCGUUAGAUUUCCCUAAUUAAUACACGAAGGAAACCCAAAAAGAAAAACUAAACCAAUCUAACAAACCGAAAUGCAAAUUAAAGUCAC .....----..............(((((((.((.((((((((...................((....))....((.....)).....)))))))).)).))))).))............. ( -14.40) >DroEre_CAF1 2982 116 + 1 AGUUU----AUCAUUUACUUACCGCUUUCGUUUCGUUAGAUUUCCCUAAUUAACAUGCGAAAGAAACCCAAAAAGAAAACCUAAACCAGUCUAACAAACCGAAAUGCAAAUUAAAAUCAC .....----..............(((((((.((.((((((((...............(....)..........((.....)).....)))))))).)).))))).))............. ( -14.60) >DroYak_CAF1 4515 114 + 1 AGUUUUAUCAUCAUUUACUUACCGCUUUCGUUUCGUUAGAUUUCCCUAAUUAACUCGCGAAAGAAACCCAAAAA------CUAAACCAAUCUAACCAACCGAAAUGCAAAUUAAAAUCAC .......................(((((((.((.((((((((............(..(....)..)........------.......)))))))).)).))))).))............. ( -12.73) >consensus AGUUU____CUCAUUUACUUAACGCUUUCGUUUCGUUAGAUUUCCCUAAUUAACACACGAAAGAAACCCAAAAAGAAAAACUAAACCAAUCUAACAAACCGAAAUGCAAAUUAAAAUCAC .......................(((((((.((.((((((((...............(....)..........((.....)).....)))))))).)).))))).))............. (-13.34 = -13.38 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:47 2006