Locus 5228

Sequence ID X_DroMel_CAF1
Location 13,641,477 – 13,641,570
Length 93
Max. P 0.573374
window8473

overview

Window 3

Location 13,641,477 – 13,641,570
Length 93
Sequences 4
Columns 94
Reading direction reverse
Mean pairwise identity 92.16
Mean single sequence MFE -15.90
Consensus MFE -12.80
Energy contribution -13.30
Covariance contribution 0.50
Combinations/Pair 1.04
Mean z-score -1.58
Structure conservation index 0.81
SVM decision value 0.08
SVM RNA-class probability 0.573374
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13641477 93 - 22224390
CAUAUUCAUGUACUUGUACGUAGUACAAGUGUGUAUAUUCGUCAUAUAAA-AAACAAACAGUUUACGCUUUAAAGUGAAAAUAUAUAAGAGAUA
.......(..(((((((((...)))))))))..)...(((...(((((..-((((.....)))).((((....))))....)))))..)))... ( -16.10)
>DroSim_CAF1 11513 93 - 1
CAUAUUCAAGUACUUGUACGUAGUACAAGUGUGUAUAUUCGUCAUAUAAA-AAACAAACAGUUUACGCUUUAAAGUGAACAUAUAUAAGAGAUA
....(((...(((((((((...)))))))))(((((((..((........-..)).....((((((........))))))))))))).)))... ( -16.50)
>DroEre_CAF1 11641 91 - 1
CAUAUUUAAGCACUUGUAC--ACUACAAGUGUGUAUAUUCUUAAUAUAAA-AAACAAACAGUUUCCGCUUUAAAGUGAAAAUAUAUAAGAGAUA
.........(((((((((.--..))))))))).....((((((.((((..-((((.....)))).((((....))))....))))))))))... ( -16.50)
>DroYak_CAF1 12385 94 - 1
CAUAUUUUAGCACUUGUACGUAGCACAAGUGGGUAUAUUCGUCAUAUAAAAAAACAAACAGUUUACGCUUUAAAGUGAAAAUAUAUAAGAGAUA
..((((((..(((((((.......))))))).(((((((............((((.....)))).((((....))))..)))))))..)))))) ( -14.50)
>consensus
CAUAUUCAAGCACUUGUACGUAGUACAAGUGUGUAUAUUCGUCAUAUAAA_AAACAAACAGUUUACGCUUUAAAGUGAAAAUAUAUAAGAGAUA
..........((((((((.....))))))))((((((((............((((.....)))).((((....))))..))))))))....... (-12.80 = -13.30 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:47 2006