Locus 5226

Sequence ID X_DroMel_CAF1
Location 13,636,386 – 13,636,486
Length 100
Max. P 0.934075
window8471

overview

Window 1

Location 13,636,386 – 13,636,486
Length 100
Sequences 3
Columns 100
Reading direction forward
Mean pairwise identity 93.33
Mean single sequence MFE -23.40
Consensus MFE -22.02
Energy contribution -21.47
Covariance contribution -0.55
Combinations/Pair 1.10
Mean z-score -2.25
Structure conservation index 0.94
SVM decision value 1.23
SVM RNA-class probability 0.934075
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13636386 100 + 22224390
CAUCGGUAUAUAGUAUCAAUAUUUUUAUAGCUUGCAGGUGUUACUAUGCGGUUUUAUGCAAAUACCGUGCCUUGUUUGGUUUUUCCCAUUGAUCCAGACU
....(((((...(((....(((....)))...))).((((((....((((......)))))))))))))))..((((((.((........)).)))))). ( -21.00)
>DroSec_CAF1 5691 100 + 1
UAUGGGUAUAUAGUAUCAAUAUUUGUAUAGUUUGCAGGUGUUACUAUGCAGUUUUAUGCAAAUAUCUUGCCUUGUUUGGUUUUUCCCAUUUAUCCAGACU
..((((((....(((...((((((((((((.(((((((.....)).)))))..))))))))))))..)))......(((......)))..)))))).... ( -23.30)
>DroSim_CAF1 6569 100 + 1
UAUGGGUAUAUAGUAUCAAUAUUUGUAUAGUUUGCAGGUGUUACUAUGCAAUUUUAUGCAAAUACCUUGCCUUGUUUGGGUUUUCCCAUUUAUCCAGACU
...((((((((((((...(((((((((.....)))))))))))))))(((......)))..))))))......((((((((..........)))))))). ( -25.90)
>consensus
UAUGGGUAUAUAGUAUCAAUAUUUGUAUAGUUUGCAGGUGUUACUAUGCAGUUUUAUGCAAAUACCUUGCCUUGUUUGGUUUUUCCCAUUUAUCCAGACU
...((((((((((((...(((((((((.....)))))))))))))))(((......)))..))))))......((((((..............)))))). (-22.02 = -21.47 +  -0.55)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:45 2006