| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 13,635,395 – 13,635,499 |
| Length | 104 |
| Max. P | 0.943642 |
| Location | 13,635,395 – 13,635,499 |
|---|---|
| Length | 104 |
| Sequences | 3 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 71.01 |
| Mean single sequence MFE | -20.31 |
| Consensus MFE | -13.98 |
| Energy contribution | -15.10 |
| Covariance contribution | 1.12 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.69 |
| SVM decision value | 1.34 |
| SVM RNA-class probability | 0.943642 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13635395 104 - 22224390 UAGGUUCGCAACAAAAAAAAAGAAACCUAAUUUCAUAACCCACAGAAAUGUGAUUAUUAUGCACUUCAA--CGAGGUGCAACACUGCGUAUGAGUGAUAAUCUUA-----------A (((((((..............).))))))..((((((...((((....)))).......((((((((..--.))))))))........))))))...........-----------. ( -22.84) >DroSec_CAF1 4738 102 - 1 AAGGUUCGCAUUAAA--AAAUGAAACUUAAUUUCAUAAUUCACAACAAUGUGAUAUUUAUGCAUUUCAA--CGACGUGCAACACUGCGUAUGAGUGAUAAUCUUC-----------A ((((((.((((.(((--..((((((.....))))))...(((((....)))))..)))))))..(((((--((..(((...)))..))).))))....)))))).-----------. ( -16.90) >DroEre_CAF1 5603 113 - 1 UAGGUUCCCAACAAUAA--AGGAAA--UCAUUGUAUAACCAGCAGAAAUGUGGUAUCAUUGCAUUUAAAAAAACGGUGCAACACUGCGUAUGAGUGAUAAUCCUAAGGUUUCUAUAA ((((..((.........--((((.(--(((((((((.((((.((....))))))....(((((((.........)))))))......)))).))))))..))))..))..))))... ( -21.20) >consensus UAGGUUCGCAACAAAAAAAAAGAAAC_UAAUUUCAUAACCCACAGAAAUGUGAUAUUUAUGCAUUUCAA__CGAGGUGCAACACUGCGUAUGAGUGAUAAUCUUA___________A ...................((((................(((((....)))))......((((((((.....)))))))).((((.......))))....))))............. (-13.98 = -15.10 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:44 2006