| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 13,630,277 – 13,630,380 |
| Length | 103 |
| Max. P | 0.738294 |
| Location | 13,630,277 – 13,630,380 |
|---|---|
| Length | 103 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.17 |
| Mean single sequence MFE | -30.30 |
| Consensus MFE | -20.72 |
| Energy contribution | -21.17 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.44 |
| SVM RNA-class probability | 0.738294 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13630277 103 + 22224390 UGCUACCAUAGAACGCACAGUUUAAUGGAAGCGCCCUUCUCUGCGAUUCUCAAACGGCCUACAUAAGUAGCGGCCAUUCAA-----------------GGGCCCUUCUCUGCGCUUUUCA .(((.((((.((((.....)))).)))).)))((((((......(.....)....(((((((....)))..))))....))-----------------)))).................. ( -27.90) >DroSec_CAF1 25305 116 + 1 AGCUGCCAUAGAACGCACCGUUUUAUCGAAGCGCCCUUCUCUGCGAUUCUCAAACGGACUACAUAGGUACCGGCCAUAGAACGCCCUGAUUUCUCAAUGGGCUCUUCUCUCCGCUU---- (((....((((((((...)))))))).((((.((((......(((.((((....((((((.....))).))).....)))))))..(((....)))..)))).)))).....))).---- ( -30.50) >DroSim_CAF1 18576 120 + 1 AGCUGCCAUAGAACAAACCGUUCUAUCGAAGCGCCCUUCUCUGCGAUUCUCAAACGGACUACAUAGGUAGCGGCCAUAGAACGCACUGAUUUCCCAAUGGGCUCUUCUCUCCGCUUCUCA (((....(((((((.....))))))).((((.((((.((..((((.((((....(.(.((((....))))).)....))))))))..)).........)))).)))).....)))..... ( -32.50) >consensus AGCUGCCAUAGAACGCACCGUUUUAUCGAAGCGCCCUUCUCUGCGAUUCUCAAACGGACUACAUAGGUAGCGGCCAUAGAACGC_CUGAUUUC_CAAUGGGCUCUUCUCUCCGCUU_UCA .((....(((((((.....))))))).((((.((((.((.....)).........((.((((....))))...)).......................)))).)))).....))...... (-20.72 = -21.17 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:42 2006