Locus 5222

Sequence ID X_DroMel_CAF1
Location 13,628,581 – 13,628,701
Length 120
Max. P 0.514646
window8467

overview

Window 7

Location 13,628,581 – 13,628,701
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 96.00
Mean single sequence MFE -31.94
Consensus MFE -27.96
Energy contribution -28.60
Covariance contribution 0.64
Combinations/Pair 1.09
Mean z-score -1.22
Structure conservation index 0.88
SVM decision value -0.04
SVM RNA-class probability 0.514646
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13628581 120 - 22224390
CCCAGAUUGUUGACUGUUUGCUUUUGGUAAUACUAAAUUUAGCGAACAUUGCCUGCGAAUACAUUUUCUUAAAGUCUAUAAAAAGCGAAAGCGAAGGCCAGCGGGACGGGACGAAACGGG
(((...(((((...(((((((((((((.....)))))...))))))))(((((((((((......))).....((((.......((....))..))))..))))).))))))))...))) ( -32.40)
>DroSec_CAF1 22240 120 - 1
CCCAGAUUGUUGACUGUUUGCUUUUGGUAAUACUAAAUUUAGCGAACGCUGCCUGCGAAUACAUUUUCUUAAAGUCUAUAAAAAGCGAAAGCGAAAGCCAGCGGGACGGGACGAAACGGG
(((...(((((....((((((((((((.....)))))...))))))).(((((((((((......)))................((....))........))))).))))))))...))) ( -33.60)
>DroSim_CAF1 15495 120 - 1
CCCAGAUUGUUGACUGUUUGCUUUUGGUAAUACUAAAUUUAGCGAACGCUGCCUGCGAAUACAUUUUCUUAAAGUCUAUAAAAAGCGAAAGCGAAAGCCAGCGGGACGGGACGAAACGGG
(((...(((((....((((((((((((.....)))))...))))))).(((((((((((......)))................((....))........))))).))))))))...))) ( -33.60)
>DroEre_CAF1 13609 119 - 1
CCCAGAUUGUUGACUGUUUGCUUUUGGUAAUACUAAAUUUAGCAAACGCUGCCUGCGAAUCCAUUUACUUAAAGUCUAUAAAAAGCGAAAGCGAAAGCUAGCG-AACGGGACGAAACGGG
(((...(((((..((((((((.(((((.....)))))..((((...(((.....)))...........................((....))....)))))))-))))))))))...))) ( -31.10)
>DroYak_CAF1 12929 119 - 1
CCCAGAUUGUUGACUGUUUGCAUUUGGUAAUACUAAAUUUAGCAAACGCUGCCUGCGAAUCCAUUUACUUAAAGUCUAUAAAAAGCGAAAGCGAAAGCCAGCG-GACGGGACGAAACGGG
(((...(((((..((((((((((((((.....))))))...((...(((.....)))...........................((....))....))..)))-))))))))))...))) ( -29.00)
>consensus
CCCAGAUUGUUGACUGUUUGCUUUUGGUAAUACUAAAUUUAGCGAACGCUGCCUGCGAAUACAUUUUCUUAAAGUCUAUAAAAAGCGAAAGCGAAAGCCAGCGGGACGGGACGAAACGGG
(((...(((((...(((((((((((((.....)))))...))))))))(((((((((((......)))................((....))........))))).))))))))...))) (-27.96 = -28.60 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:41 2006