| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 13,625,666 – 13,625,772 |
| Length | 106 |
| Max. P | 0.992789 |
| Location | 13,625,666 – 13,625,772 |
|---|---|
| Length | 106 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 87.25 |
| Mean single sequence MFE | -32.38 |
| Consensus MFE | -26.98 |
| Energy contribution | -28.82 |
| Covariance contribution | 1.84 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.50 |
| Structure conservation index | 0.83 |
| SVM decision value | 2.35 |
| SVM RNA-class probability | 0.992789 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13625666 106 - 22224390 UUUCCUUAGUCCGCUAUUUCUUUUAUUUUAUCGCAUUUUGGUAUUUAUUAUAUCCAAUGGAAUGUGGCAAGGCACGAAGGAAAUGGGCGAAAAGGAAG--------------GACAAUGA (((((((..(((.(((((((((((.((((..(((((((((((((.....))).)))...)))))))..))))...)))))))))))).)).)))))))--------------........ ( -27.10) >DroSec_CAF1 19434 116 - 1 UUUCCUUAGUCCGCUAUUUCUUUUAUUUUAUCGCAUUUUGGUAUUUAUUAUAUGAAAUGGAAUGAGGAAAGC----AAGGAAAUGGCGGAAAAGGAAGGAAAACGCUGGCAGGACAAUGA (((((((..((((((((((((((..((((.((((((((((.(((.....))))))))))...))).))))..----)))))))))))))).....))))))).((.((......)).)). ( -32.00) >DroSim_CAF1 12665 120 - 1 UUUCUUUAGUCCGCUAUUUCUUUUAUUUUAUCGCAUUUUGGUAUUUAUUAUAUCCAAUGGAAUGAGGCAAGCGACGAAGGAAAUGGCGGAAAAGGAAGGAAAACGCUAGCAGGACAAUGA (((((((..((((((((((((((..((((..(.(((((((((((.....))).)))...))))).)..))..))..))))))))))))))....)))))))................... ( -31.60) >DroEre_CAF1 10887 120 - 1 UUUCCUUAGUCGGCUAUUUCUUUUAUUUUAUCGCAGUUUGGUAUUUAUUAUGUCCAAUGGAAUGCGGCAAGGCAUGAAGGAAAUGGCGAAAAAGGAAGGAAAAUGCUAGCAGGACAAAGA (((((((..(((.((((((((((((((((..((((..(((((((.....))).)))).....))))..)))..))))))))))))))))..)))))))...................... ( -34.00) >DroYak_CAF1 10204 120 - 1 UUUCCUUAGUCCGCUAUUUCUUUUAUUUCAUCGCAUUUUGGUAUUUAUUAUAUCCAAUGGAAUGUGGCAGGGCACGAAGGAAAUGGCGGAAAAGGAAGGAAAAUGCUAGCAGGACAAAGA (((((((..((((((((((((((..(.((.((((((((((((((.....))).)))...))))))))...)).)..)))))))))))))).....))))))).................. ( -37.20) >consensus UUUCCUUAGUCCGCUAUUUCUUUUAUUUUAUCGCAUUUUGGUAUUUAUUAUAUCCAAUGGAAUGAGGCAAGGCACGAAGGAAAUGGCGGAAAAGGAAGGAAAACGCUAGCAGGACAAUGA (((((((..(((((((((((((((.((((.((((((((((((((.....)))))....))))))))).))))...))))))))))))))).)))))))...................... (-26.98 = -28.82 + 1.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:37 2006