| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 13,621,594 – 13,621,693 |
| Length | 99 |
| Max. P | 0.986912 |
| Location | 13,621,594 – 13,621,693 |
|---|---|
| Length | 99 |
| Sequences | 3 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 78.68 |
| Mean single sequence MFE | -31.50 |
| Consensus MFE | -22.49 |
| Energy contribution | -22.83 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.34 |
| Structure conservation index | 0.71 |
| SVM decision value | 2.06 |
| SVM RNA-class probability | 0.986912 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13621594 99 - 22224390 CAGCCAGGGUAACACGGCUAAGCCGGCUACGGAAAAAUCAGCAAAUACGCCUGUAUUUUUUGGCUGGCGUCUGUCGCACUCCCUGCCCUU------------UCCCAUUUC ....(((((.....((((...(((((((...(((((((((((......).))).))))))))))))))....))))....))))).....------------......... ( -30.80) >DroSim_CAF1 7419 97 - 1 CAGCCAGGGUAACACGGCUAAGCCGGCUACGGAAAAAUCAGCAAAUACACCUGU-UUUUUCGGCUGGCGUCUGUCGCACUC-CUGCCCUU------------UCCCAUUUC .....((((((...((((...((((((..((((((((.(((.........))))-)))))))))))))....)))).....-.)))))).------------......... ( -29.50) >DroYak_CAF1 6831 108 - 1 CUGGCAGGGAAACACGGCUACGCCGGCUACGAAAAAAUCAGCAAAUAAGUUUGU-AUUUUCGGCUGGCGUCUGUCGUACUC-CCC-CCUCUCCACCCCUUCGUCACAAAUU ..((..((((...(((((.((((((((..((((((.((.(((......))).))-.))))))))))))))..)))))..))-)).-))....................... ( -34.20) >consensus CAGCCAGGGUAACACGGCUAAGCCGGCUACGGAAAAAUCAGCAAAUACGCCUGU_UUUUUCGGCUGGCGUCUGUCGCACUC_CUGCCCUU____________UCCCAUUUC .....((((((...((((...((((((..((((((...(((.........)))...))))))))))))....)))).......))))))...................... (-22.49 = -22.83 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:32 2006