Locus 5213

Sequence ID X_DroMel_CAF1
Location 13,620,598 – 13,620,718
Length 120
Max. P 0.800905
window8454

overview

Window 4

Location 13,620,598 – 13,620,718
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 91.67
Mean single sequence MFE -25.58
Consensus MFE -20.73
Energy contribution -20.74
Covariance contribution 0.01
Combinations/Pair 1.12
Mean z-score -2.60
Structure conservation index 0.81
SVM decision value 0.62
SVM RNA-class probability 0.800905
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13620598 120 - 22224390
AAUUGAAAUAUUCGAUCUCAGCUGCCUUAACUUACAUGUAUAAGCAUGUACAAAAGGCUAAUUAAGCUACAAAUUCAUUGAUUUAUUCCAUUCGAUGAUAUAAUGGACCCAUGGUCCAAU
.(((((.....)))))...(((((((((....(((((((....)))))))...)))))......))))......(((((((..........))))))).....((((((...)))))).. ( -29.60)
>DroSec_CAF1 6485 120 - 1
AUUUCAAAUAUUCCAACUCAGCUUCUUAAACUUACAUGCAUAAGCGUGUACAAAAGGCUAAUUAAGUUACAAGUUCGUUGAUUUAUUCCAUUCGAUGAUAUAAUGGACCCAUGGUCCAAU
...................(((((........(((((((....)))))))....)))))...............(((((((..........))))))).....((((((...)))))).. ( -23.70)
>DroSim_CAF1 6483 120 - 1
AUUUCAAAUAUUCCAUCUCAGCUUUCUAAACUUACAUGCAUAAGCAUGCACAAAAGGCUAAUUAAGUUACAAGUUCGUUGCUUUAUUCCAUUCGAUGAUAUAAUGGACCCAUGGUCCAAU
........(((..((((..((((((.........(((((....))))).....))))))(((.((((.((......)).)))).)))......))))..))).((((((...)))))).. ( -23.44)
>consensus
AUUUCAAAUAUUCCAUCUCAGCUUCCUAAACUUACAUGCAUAAGCAUGUACAAAAGGCUAAUUAAGUUACAAGUUCGUUGAUUUAUUCCAUUCGAUGAUAUAAUGGACCCAUGGUCCAAU
...................((((.........(((((((....))))))).....))))...............(((((((..........))))))).....((((((...)))))).. (-20.73 = -20.74 +   0.01)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:29 2006