Locus 5210

Sequence ID X_DroMel_CAF1
Location 13,618,733 – 13,618,853
Length 120
Max. P 0.911082
window8447

overview

Window 7

Location 13,618,733 – 13,618,853
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 90.00
Mean single sequence MFE -36.58
Consensus MFE -30.60
Energy contribution -32.00
Covariance contribution 1.40
Combinations/Pair 1.17
Mean z-score -1.74
Structure conservation index 0.84
SVM decision value 1.07
SVM RNA-class probability 0.911082
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13618733 120 - 22224390
ACGGUAUCGGAUGGUAUCGAGUACCGGUACCGAAUGCCGAGCACCGUUAGGCAGCUGCUUUUAAUGAGCCUGAACUUUCACACCGCUGCAGCAGAAUGUAAAACUAUUAUGCACACUGCA
(((((.((((.((((((((.....))))))))....))))..)))))...(((((.((((.....)))).(((....)))....))))).((((..((((.........))))..)))). ( -41.00)
>DroSec_CAF1 4598 120 - 1
ACGGUAUCGGAUGGUAUCGAGUACCGGUACCGAAUGCCGAGCAUCGCCACGCAGCUGCUUUUAAUGAGCCUGAACUUUCACACCGCUGCAGCAGAAUGUAAAACUAUUAUGCACACUGCA
.((((.((((.((((((((.....))))))))....))))..))))....(((((.((((.....)))).(((....)))....))))).((((..((((.........))))..)))). ( -37.80)
>DroSim_CAF1 4581 120 - 1
ACGGUAUCGGAUGGUAUCGAGUACCGGUACCGAAUGCCGAGCACCGCCACGCAGUUGCUUUAAAUGAGCCUGAACUUUCACACCGCUGCAGCAGAAUGUAAAACUAUUAUGCACACUGCA
.((((.((((.((((((((.....))))))))....))))..))))....(((((.((((.....)))).(((....)))....))))).((((..((((.........))))..)))). ( -37.90)
>DroEre_CAF1 4598 120 - 1
ACGGUAUCGGAUGGUAUCGAGUACCGGUACCAAAUACCGAGCACCGUUAGGCAGCUGCUUUUAAUGAGCCUGAACUUUCACACCGCUGCAGCGGAAUGUAAAACUAUUAUGCACACGGGA
.((((((....((((((((.....)))))))).))))))....((((...(((((.((((.....)))).(((....)))....))))).(((.((((......)))).)))..)))).. ( -36.90)
>DroYak_CAF1 4369 106 - 1
ACGGUAUCGGAUGGUAUCGAGUACCGG--------------CACCGUUAGGCAGCUGCUCUUAAUGAGCCUGAACUUUCACACCGCUGCACCAGAAUGUAAAACUAUUAUGCACAUGGGA
(((((..(((((........)).))).--------------.)))))...(((((.((((.....)))).(((....)))....))))).(((...((((.........))))..))).. ( -29.30)
>consensus
ACGGUAUCGGAUGGUAUCGAGUACCGGUACCGAAUGCCGAGCACCGUUAGGCAGCUGCUUUUAAUGAGCCUGAACUUUCACACCGCUGCAGCAGAAUGUAAAACUAUUAUGCACACUGCA
.((((.((((.((((((((.....))))))))....))))..))))....(((((.((((.....)))).(((....)))....))))).((((..((((.........))))..)))). (-30.60 = -32.00 +   1.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:23 2006