Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 13,617,654 – 13,617,771 |
Length | 117 |
Max. P | 0.968463 |
Location | 13,617,654 – 13,617,771 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 95.56 |
Mean single sequence MFE | -43.65 |
Consensus MFE | -42.54 |
Energy contribution | -42.98 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.12 |
Mean z-score | -1.43 |
Structure conservation index | 0.97 |
SVM decision value | 1.63 |
SVM RNA-class probability | 0.968463 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13617654 117 - 22224390 CUUGCGGGAGAGAUGCGACGCGCACGCAGCGUCGUCAAUGGAGAAAAAUAAAAGAGAAAGCGCCCGCUCAGCUCAGCCAGUCUCCGUUGACCGCGCGGUUGGCGAGCUUUCUUGCAA ..((((((((((.((((...))))(((.((((.(((((((((((.........(((..(((....)))...)))......))))))))))).)))).....)))..)))))))))). ( -49.46) >DroSec_CAF1 3545 117 - 1 CUUGGGGGAGAGAUGCGACGCGCACGCAGCGUCGUCAAUGGAGAAAAAUAAAAGAAAAAGCGCCCGCUCAGCUCAGCCAGUCUUCGUUGACCGCGUGGUUGGCGAGCUUUCUAGCAA ..((..((((((.((((...))))(((.((((.(((((((((((........((....(((....)))...)).......))))))))))).)))).....)))..))))))..)). ( -36.46) >DroSim_CAF1 3533 117 - 1 CUUGGGGGAGAGAUGCGACGCGCACGCAGCGUCGUCAAUGGAGAAAAAUAAAAGAGAAAGCGCCCGCUCAGCUCAGCCAGUCUUCGUUGACCGCGCGGUUGGCGAGCUUUCUAGCAA ..((..((((((.((((...))))(((.((((.(((((((((((.........(((..(((....)))...)))......))))))))))).)))).....)))..))))))..)). ( -40.56) >DroEre_CAF1 3508 117 - 1 CUUGCGGCAGAGAUGCGACGCGCACGCAGCGUCGUCUAUGGAGAAAAAUAAAAGAGAAAGCGCCCGCUCAGCUCAGCCAGUCUCUGUUGACCGCGCGGUCGGCGAGCUUUCUUGCAA (((((((((((((((((((((.......)))))))..................(((..(((....)))...))).....)))))))))((((....)))).)))))........... ( -41.40) >DroYak_CAF1 3279 117 - 1 UUUGCGGGGGAGAUGCGACGCGCACGCAGCGUCGUCAAUGGAGAAAAAUAAAAGAGAAAGCGCCCGCUCAGCUCAGCCAGUCUCCGUUGACCGCGCGGUCGGCGAGCUUUCUUGCAA .(((((((..((.((((((((....)).((((.(((((((((((.........(((..(((....)))...)))......))))))))))).)))).))).)))..))..))))))) ( -50.36) >consensus CUUGCGGGAGAGAUGCGACGCGCACGCAGCGUCGUCAAUGGAGAAAAAUAAAAGAGAAAGCGCCCGCUCAGCUCAGCCAGUCUCCGUUGACCGCGCGGUUGGCGAGCUUUCUUGCAA .(((((((((((.((((((((....)).((((.(((((((((((.........(((..(((....)))...)))......))))))))))).)))).))).)))..))))))))))) (-42.54 = -42.98 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:18 2006