| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 13,606,372 – 13,606,476 |
| Length | 104 |
| Max. P | 0.888234 |
| Location | 13,606,372 – 13,606,476 |
|---|---|
| Length | 104 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 77.62 |
| Mean single sequence MFE | -28.13 |
| Consensus MFE | -19.27 |
| Energy contribution | -19.38 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.95 |
| SVM RNA-class probability | 0.888234 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13606372 104 + 22224390 CCCACGGUACGCCAAGUAUCCGCUGGGUAAUGGACAGCCAUUGCAUUUAUGUGAGU----------------CCUCCUGUACUAGUUACACAUGGAUUUGUAAUAGUUUUGAUUGAAACU .(((((((((.....))).))).)))(((((((....))))))).....((..(((----------------((...((((.....))))...)))))..))..((((((....)))))) ( -30.10) >DroSim_CAF1 1143 101 + 1 CCCACGGUACGCCAAGUAUCCGCUGGGUAAUGGCCAGCCAUUGCAUUUAUGUGAGU----------------U---CUGUAUUACUUACACAUGUAUUUGUAAUGAUUUUGAUUGCAACU .(((((((((.....))).))).)))(((((((....))))))).....(((((((----------------.---.......))))))).......(((((((.......))))))).. ( -28.90) >DroYak_CAF1 1160 120 + 1 CCCACGGUACGCCAAGUAUCCGCUGGGAAAUGGUCAGCCAUUGCAUUUAUGUGAGUAUAUCUCAAUAGCUUUUCUUCUGUAACCUUUACACGUGUAUUUAUAAUGCCAUUUAUUGAAACA ((((((((((.....))).))).))))((((((.((.....(((((.....((((.....)))).............((((.....)))).))))).......))))))))......... ( -25.40) >consensus CCCACGGUACGCCAAGUAUCCGCUGGGUAAUGGACAGCCAUUGCAUUUAUGUGAGU________________UCU_CUGUAAUACUUACACAUGUAUUUGUAAUGAUUUUGAUUGAAACU .(((((((((.....))).))).)))(((((((....)))))))...((((((...................................)))))).......................... (-19.27 = -19.38 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:14 2006