Locus 5204

Sequence ID X_DroMel_CAF1
Location 13,605,231 – 13,605,333
Length 102
Max. P 0.848907
window8436

overview

Window 6

Location 13,605,231 – 13,605,333
Length 102
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 87.13
Mean single sequence MFE -54.43
Consensus MFE -50.00
Energy contribution -50.33
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.73
Structure conservation index 0.92
SVM decision value 0.78
SVM RNA-class probability 0.848907
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13605231 102 + 22224390
------------------CGCUGGCCAAGUGGAGCUCGCUGGAGCUGCUUGGCGAGGGCGACGACAGUCCGCCGCCACAUGGCGGACCCUCUAGUGCAGCAUCGGUGGGUGGGCGUGGCA
------------------.....((((.((...((((((((..(((((.....(((((.(((....)))..(((((....))))).)))))....)))))..))))))))..)).)))). ( -51.70)
>DroSim_CAF1 1 102 + 1
------------------CGCUGGCCAAGUGGAGCUCGCUGGAGCUGCUGGGCGAGGGCGACGACAGUCCGCCGCCACAUGGCGGACCCUCUAGUGCAGCAUCGGUGGGUGGGCGUGGCA
------------------.....((((.((...((((((((..(((((.....(((((.(((....)))..(((((....))))).)))))....)))))..))))))))..)).)))). ( -51.70)
>DroYak_CAF1 1 120 + 1
ACACCAAUGAGACGAACUCGCUGGCCAAGUGGAGCUCGCUGGAGCUGCUGGGCGAGGGCGACGACAGUCCCCCGCCACAUGGCGGACCCUCUAGCGCAGCAUCCGUGGGUGGGCGUGGCA
.(((....(((.....)))(((.(((...((((((((((((((((((((.((((.(((.(((....))))))))))....)))))...)))))))).))).))))..))).))))))... ( -59.90)
>consensus
__________________CGCUGGCCAAGUGGAGCUCGCUGGAGCUGCUGGGCGAGGGCGACGACAGUCCGCCGCCACAUGGCGGACCCUCUAGUGCAGCAUCGGUGGGUGGGCGUGGCA
.......................((((.((...((((((((..(((((.....(((((.(((....)))..(((((....))))).)))))....)))))..))))))))..)).)))). (-50.00 = -50.33 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:13 2006