| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 13,596,241 – 13,596,340 |
| Length | 99 |
| Max. P | 0.999499 |
| Location | 13,596,241 – 13,596,340 |
|---|---|
| Length | 99 |
| Sequences | 3 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 70.72 |
| Mean single sequence MFE | -27.07 |
| Consensus MFE | -17.32 |
| Energy contribution | -17.10 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.19 |
| Structure conservation index | 0.64 |
| SVM decision value | 3.66 |
| SVM RNA-class probability | 0.999499 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13596241 99 - 22224390 UUCUGAAAACGGUCAGUUCAGUUCUCAAUUCUCAACUGACGAUUCGCGGAAAACCCCUUACUUUAUUUGUGCGCAACAAAAGCGCGCGAGAAAGCGUCA------------ (((((..((..(((((((.((.........)).)))))))..))..))))).........((((.(((((((((.......))))))))))))).....------------ ( -27.90) >DroSec_CAF1 12476 78 - 1 UU---------------------CGCGAUUCUCAACUGACGAUUCGCGGAAAAUCCCUUACUUUAUUUGUGCGCAACAAAAGCGCGCGAGAAAGCGCCA------------ ((---------------------(((((.((((....)).)).)))))))..........((((.(((((((((.......))))))))))))).....------------ ( -26.10) >DroYak_CAF1 11599 111 - 1 UUCUAAAAGCCGUCAGACCAAAACUCGAUUCUCAACUGACGUUUUGCGGAACACCCCUUCCUUUGGUUGUGCGCAACAAAAGCGCGCGAGAAAGCGCCAAAGAAAUGCUCA ((((.(((((.(((((...................))))))))))..)))).........((((((((((((((.......))))))).......)))))))......... ( -27.22) >consensus UUCU_AAA_C_GUCAG__CA___CUCGAUUCUCAACUGACGAUUCGCGGAAAACCCCUUACUUUAUUUGUGCGCAACAAAAGCGCGCGAGAAAGCGCCA____________ ............................(((((..(((.((...)))))...................((((((.......)))))))))))................... (-17.32 = -17.10 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:12 2006