| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 13,594,932 – 13,595,034 |
| Length | 102 |
| Max. P | 0.671220 |
| Location | 13,594,932 – 13,595,034 |
|---|---|
| Length | 102 |
| Sequences | 4 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 80.77 |
| Mean single sequence MFE | -32.70 |
| Consensus MFE | -21.67 |
| Energy contribution | -23.41 |
| Covariance contribution | 1.75 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.671220 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13594932 102 - 22224390 UAAGCUAAACUACGCAUUCCGGGUUUUUAUU---UUCUGAUUAUCAGAAAGUGCGUGACGAUCGAACGUCCCUGG-UAACCAGGGGGCGUGGCCAUGGGCGCUCUA ...(((...((((((....((((((..((((---(((((.....)))))))))...)))..)))....(((((((-...))))))))))))).....)))...... ( -33.50) >DroSec_CAF1 11194 105 - 1 UAAGCUAAACUACGAAUUUCGGGUUUUUUUUUAGUUCUGAGUAUCAGAAAGUGCGUGGCAAUCGAACUUCCCUGG-UAACCAGGGGGCGUGGCCAUGGACGCCCUA ....................((((..........(((((.....))))).((.((((((...((....(((((((-...))))))).))..)))))).)))))).. ( -36.00) >DroEre_CAF1 10892 91 - 1 UAAACUAAACUACGCUUUCCAGGUCU----A---UUCUGAGUAUCAGAAAGUGCGUGGCGAUCAAACUUCCCUGC-UUUCCAGGAGGCGGAG-------CGCCCUA ............((((..(((.((((----.---(((((.....))))))).)).))).............((((-(((....)))))))))-------))..... ( -22.90) >DroYak_CAF1 10388 103 - 1 UAAACUAAACUACGCUUUUCGGGUUUCCAUU---UUCUGAGUAUCAGAAAGUGCGUGGCGAUCGAACUUCCCUGGUUUUCCAGGGGGCGGGGCCAUAUGCGCCCUA ............((((.(((((((..(((((---(((((.....))))))))).)..))..)))))...((((((....))))))))))(((((....).)))).. ( -38.40) >consensus UAAACUAAACUACGCAUUCCGGGUUUUUAUU___UUCUGAGUAUCAGAAAGUGCGUGGCGAUCGAACUUCCCUGG_UAACCAGGGGGCGGGGCCAUGGGCGCCCUA .........(((((((((................(((((.....))))))))))))))............(((((....)))))((((((........)))))).. (-21.67 = -23.41 + 1.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:11 2006