Locus 5201

Sequence ID X_DroMel_CAF1
Location 13,592,825 – 13,592,921
Length 96
Max. P 0.530346
window8433

overview

Window 3

Location 13,592,825 – 13,592,921
Length 96
Sequences 5
Columns 102
Reading direction forward
Mean pairwise identity 88.45
Mean single sequence MFE -35.86
Consensus MFE -24.08
Energy contribution -25.40
Covariance contribution 1.32
Combinations/Pair 1.06
Mean z-score -2.05
Structure conservation index 0.67
SVM decision value -0.01
SVM RNA-class probability 0.530346
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13592825 96 + 22224390
UCACCUGGCGGCUGGUCAUUGAUUCCAAUUUGGCCGGCUUCCAAUCGCUGGAGGUCA--AUGCCGGGUCACA---CCAGUUCCUCACU-UGACGCAGGUGUU
..((((((((((..(..((((....)))))..)))((((((((.....)))))))).--..))))))).(((---((.(((.......-.)))...))))). ( -38.50)
>DroSec_CAF1 9083 102 + 1
UCACCUGGCGGCUGGUCAUUGAUUCCAAUUUGGCAGGCUUCCAAUCGCUGGAGGUCACACUGCCGGGUCACACCACCAGUUCCUCACUUUGACGCAGGUGUU
.((((((.((((((((...((((((......((((((((((((.....)))))))....)))))))))))....))))))...((.....)))))))))).. ( -36.70)
>DroSim_CAF1 9568 101 + 1
UCACCUGGCGGCUGGUCAUUGAUUCCAAUUUGGCAGGCUUCCAAUCGCUGGAGGUCACACAGCCGGGUCACACCACCAGUUCCUCACU-UGACGCAGGUGUU
.((((((.(((((((((((((....)))..)))).((((((((.....))))))))...))))))(((......)))...........-.....)))))).. ( -37.50)
>DroEre_CAF1 8679 93 + 1
UCACCUGG---CUAGUCAUUGAUUCGAAAUUGGCCGGGUUCCAAUCGCUGGAGGUCA--AAGCCGGGUCACA---CCAGUCCCUCACU-UGACGGAGGUGUU
..((((((---((.((((.(........).)))).((.(((((.....))))).)).--.)))))))).(((---((..(((.((...-.)).)))))))). ( -32.10)
>DroYak_CAF1 8278 93 + 1
UCACCUGG---CUGGUCAUUGAUUCCAACUCGGUCGGCUUCCAAUCGCUGGAGGUCA--AUGCCGGGUCACA---CUAGUCCCGCACU-UGACGCAGGUGUU
.(((((((---(((..(.(((....)))...)..))))(((((.....)))))((((--((((.(((.(...---...).)))))).)-)))).)))))).. ( -34.50)
>consensus
UCACCUGGCGGCUGGUCAUUGAUUCCAAUUUGGCCGGCUUCCAAUCGCUGGAGGUCA__AUGCCGGGUCACA___CCAGUUCCUCACU_UGACGCAGGUGUU
.(((((((.((((((....((((((......(((.((((((((.....)))))))).....))))))))).....)))))).)((.....))..)))))).. (-24.08 = -25.40 +   1.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:10 2006