Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,504,618 – 1,504,772 |
Length | 154 |
Max. P | 0.998856 |
Location | 1,504,618 – 1,504,732 |
---|---|
Length | 114 |
Sequences | 4 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 67.71 |
Mean single sequence MFE | -52.77 |
Consensus MFE | -31.54 |
Energy contribution | -34.48 |
Covariance contribution | 2.94 |
Combinations/Pair | 1.31 |
Mean z-score | -2.30 |
Structure conservation index | 0.60 |
SVM decision value | 3.25 |
SVM RNA-class probability | 0.998856 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1504618 114 + 22224390 CAGCAGCAGCGGCGGCCAACAAUAGCGUUAAUGUGGGCGGUGGAUCGGUAGGCGGGGCCGGGGGCAAUGCAGUGGCUGCUGCUGCAGCCGCAGCUGCCGCGGCGGCCGAACUGC ..((((...((((.(((.....((.((((......)))).))...(((((((((..(((...)))..))).((((((((....))))))))..)))))).))).))))..)))) ( -57.30) >DroVir_CAF1 48029 96 + 1 CUGCGGCGG---CGGUUAACAAUAGUGUU------GCAGGG---------GGCGGGGCUGGGGGGAAUGCUGUGGCCGCAGCAGCAGCUGCCGCUGCGGCCGCUGCUGAGCUGC (((((((.(---((((...(..((((.((------((....---------.)))).))))..).....))))).)))))))(((((((.((((...)))).)))))))...... ( -51.20) >DroSec_CAF1 29326 114 + 1 CAGCAGCAGCGGCGGCCAACAAUAGCGUUAAUGUAGGCGGUGGAUCGGUAGGCGGGGCCGGGGGCAAUGCAGUGGCUGCUGCUGCAGCCGCAGCUGCCGCGGCGGCCGAACUGC ..((((...((((.(((.....((.((((......)))).))...(((((((((..(((...)))..))).((((((((....))))))))..)))))).))).))))..)))) ( -57.20) >DroWil_CAF1 22074 90 + 1 CUGCUGCUG---------GUAAUAGUG------UUGGCGGCG---------GUGGGGCCAAUGGCAAUGCUGUGGCAGCGGCAGCUGCAGCAGCUGCUGCCGCCGCUGAGUUAU (..((((((---------.((((...)------))).)))))---------)..).(((...)))(((...(((((.((((((((((...)))))))))).)))))...))).. ( -45.40) >consensus CAGCAGCAG___CGGCCAACAAUAGCGUU____U_GGCGGUG________GGCGGGGCCGGGGGCAAUGCAGUGGCUGCUGCAGCAGCCGCAGCUGCCGCCGCGGCCGAACUGC .....((((...(((((..................................(((..(((...)))..))).((((((((((((((....)))))))))))))))))))..)))) (-31.54 = -34.48 + 2.94)
Location | 1,504,618 – 1,504,732 |
---|---|
Length | 114 |
Sequences | 4 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 67.71 |
Mean single sequence MFE | -41.98 |
Consensus MFE | -26.38 |
Energy contribution | -27.50 |
Covariance contribution | 1.12 |
Combinations/Pair | 1.21 |
Mean z-score | -1.91 |
Structure conservation index | 0.63 |
SVM decision value | 2.39 |
SVM RNA-class probability | 0.993338 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1504618 114 - 22224390 GCAGUUCGGCCGCCGCGGCAGCUGCGGCUGCAGCAGCAGCCACUGCAUUGCCCCCGGCCCCGCCUACCGAUCCACCGCCCACAUUAACGCUAUUGUUGGCCGCCGCUGCUGCUG (((((.((((.((((.(((((.(((((((((....))))))...))))))))..))))..................(((.(((.((....)).))).))).))))..))))).. ( -48.00) >DroVir_CAF1 48029 96 - 1 GCAGCUCAGCAGCGGCCGCAGCGGCAGCUGCUGCUGCGGCCACAGCAUUCCCCCCAGCCCCGCC---------CCCUGC------AACACUAUUGUUAACCG---CCGCCGCAG ((.((...((((.((((((((((((....))))))))))))...((..........))......---------..))))------((((....)))).....---..)).)).. ( -38.80) >DroSec_CAF1 29326 114 - 1 GCAGUUCGGCCGCCGCGGCAGCUGCGGCUGCAGCAGCAGCCACUGCAUUGCCCCCGGCCCCGCCUACCGAUCCACCGCCUACAUUAACGCUAUUGUUGGCCGCCGCUGCUGCUG (((((.((((.((((.(((((.(((((((((....))))))...))))))))..))))..................(((.(((.((....)).))).))).))))..))))).. ( -48.00) >DroWil_CAF1 22074 90 - 1 AUAACUCAGCGGCGGCAGCAGCUGCUGCAGCUGCCGCUGCCACAGCAUUGCCAUUGGCCCCAC---------CGCCGCCAA------CACUAUUAC---------CAGCAGCAG ........((((((((((..((((..(((((....)))))..)))).)))))...((.....)---------))))))...------.........---------......... ( -33.10) >consensus GCAGCUCAGCCGCCGCGGCAGCUGCGGCUGCAGCAGCAGCCACAGCAUUGCCCCCGGCCCCGCC________CACCGCC_A____AACACUAUUGUUGGCCG___CUGCUGCAG ......(((((((.((....)).)))))))((((((((((....((...((.....))...)).....................(((((....)))))......)))))))))) (-26.38 = -27.50 + 1.12)
Location | 1,504,658 – 1,504,772 |
---|---|
Length | 114 |
Sequences | 3 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 77.78 |
Mean single sequence MFE | -60.63 |
Consensus MFE | -42.51 |
Energy contribution | -44.97 |
Covariance contribution | 2.46 |
Combinations/Pair | 1.21 |
Mean z-score | -1.62 |
Structure conservation index | 0.70 |
SVM decision value | 0.59 |
SVM RNA-class probability | 0.791327 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1504658 114 + 22224390 UGGAUCGGUAGGCGGGGCCGGGGGCAAUGCAGUGGCUGCUGCUGCAGCCGCAGCUGCCGCGGCGGCCGAACUGCUUCUCUCUCCGAUCGUUGGCGCCGCUGCCGUGGCCGGGGG .((..((((((.(((.((((((((....((((((((((((((.(((((....))))).)))))))))..)))))....)))))(....)..))).)))))))))...))..... ( -63.60) >DroSec_CAF1 29366 114 + 1 UGGAUCGGUAGGCGGGGCCGGGGGCAAUGCAGUGGCUGCUGCUGCAGCCGCAGCUGCCGCGGCGGCCGAACUGCUUCUCUCUCCGAUCGUUGGCGCCGCUGCCGUGGCCGGGGG .((..((((((.(((.((((((((....((((((((((((((.(((((....))))).)))))))))..)))))....)))))(....)..))).)))))))))...))..... ( -63.60) >DroWil_CAF1 22099 105 + 1 CG---------GUGGGGCCAAUGGCAAUGCUGUGGCAGCGGCAGCUGCAGCAGCUGCUGCCGCCGCUGAGUUAUUGCUCUCACCAAUUGUGGGGGCAGCCGCUGUGGCGGGGGG ((---------(((((((....((((..(((((.(((((....))))).)))))))))))).)))))).....((((((((((.....))))))))))((((....)))).... ( -54.70) >consensus UGGAUCGGUAGGCGGGGCCGGGGGCAAUGCAGUGGCUGCUGCUGCAGCCGCAGCUGCCGCGGCGGCCGAACUGCUUCUCUCUCCGAUCGUUGGCGCCGCUGCCGUGGCCGGGGG ....(((((.((((((((((((((....((((((((((((((.(((((....))))).)))))))))..))))).....)))))).........))).)))))...)))))... (-42.51 = -44.97 + 2.46)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:36 2006