Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 238,858 – 238,954 |
Length | 96 |
Max. P | 0.938478 |
Location | 238,858 – 238,954 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 75.97 |
Mean single sequence MFE | -32.22 |
Consensus MFE | -17.99 |
Energy contribution | -17.52 |
Covariance contribution | -0.47 |
Combinations/Pair | 1.24 |
Mean z-score | -2.09 |
Structure conservation index | 0.56 |
SVM decision value | 1.27 |
SVM RNA-class probability | 0.938478 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 238858 96 - 22224390 UCUUGGUGGUCUGAUCCGCUUGGGAUCUUUGAAAUUUGUAAUACGCGCAACCGCAAAUGAUGCAAAUUUCCUUAGAGAUUGCCGCUGAGAUUAAGC----------------- (((..(((((..(((((.....)))))...((((((((((.((.(((....)))...)).))))))))))..........)))))..)))......----------------- ( -29.70) >DroPse_CAF1 45184 102 - 1 UGGUGGUGGUCUUGCUUCCAUAUUCUGGAUGGGAUUUGCAUUACGC-CAGCCGCAAAUGAUGCAAAUUUCCUUGGAGAUUGCCGCUAAGAUUACGC----------CCGGAAG ((((((..(((((...((((.....)))).(..((((((((((.((-.....))...))))))))))..)....)))))..)))))).........----------....... ( -34.00) >DroSec_CAF1 33340 96 - 1 UCUUGGUGGUCUGAUCCGCUUGGGAUCUUUGAGAUUUGUAAUACGCGCAACCGCAAAUGAUGCAAAUUUCCUUACAGAUCGCCGCUAAGAUUAAGC----------------- ((((((((((..(((((.....))))).....(((((((((...(((....)))....((........)).)))))))))))))))))))......----------------- ( -31.00) >DroEre_CAF1 39168 96 - 1 UCUUGGUGGUCUGAUCCGCUUGGGAUCUUUGAGAUUUGUAAUACGCGCAGCCGCAAAUGAUGCAAAUUUCCUUAGAGAUUGCCGCUAAGAUUAAGC----------------- ((((((((((..(((((.....)))))...((((((((((.((.(((....)))...)).))))))))))..........))))))))))......----------------- ( -30.30) >DroAna_CAF1 49487 108 - 1 CCUCGGUGGUCUGAUAUCU-----CUCCAUGGGAUUUGCAUUACGCGCAGCCGCAAAUGAUGCAAAUUUCCUUACAGAUUGCCGCCAAGAUUACGAGGCUCAGAGACCAGAAG .(((((..(((((...(((-----(.....))))(((((((((.(((....)))...)))))))))........)))))..))(((..(....)..)))...)))........ ( -34.30) >DroPer_CAF1 45115 102 - 1 UGGUGGUGGUCUUGCUUCCAUAUUCUGGAUGGGAUUUGCAUUACGC-CAGCCGCAAAUGAUGCAAAUUUCCUUGGAGAUUGCCGCUAAGAUUACGC----------CCGGAAG ((((((..(((((...((((.....)))).(..((((((((((.((-.....))...))))))))))..)....)))))..)))))).........----------....... ( -34.00) >consensus UCUUGGUGGUCUGAUCCCCUUGGGAUCUAUGAGAUUUGCAAUACGCGCAGCCGCAAAUGAUGCAAAUUUCCUUAGAGAUUGCCGCUAAGAUUAAGC_________________ ...((((((((((.................((((((((((.((.(((....)))...)).))))))))))....))))))))))............................. (-17.99 = -17.52 + -0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:23 2006