Locus 5197

Sequence ID X_DroMel_CAF1
Location 13,580,634 – 13,580,732
Length 98
Max. P 0.747205
window8428

overview

Window 8

Location 13,580,634 – 13,580,732
Length 98
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 75.16
Mean single sequence MFE -26.42
Consensus MFE -11.63
Energy contribution -11.47
Covariance contribution -0.16
Combinations/Pair 1.37
Mean z-score -2.04
Structure conservation index 0.44
SVM decision value 0.47
SVM RNA-class probability 0.747205
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13580634 98 - 22224390
CCUUCACCAUGCGUGAUUAAAUCAUAGGGA--------CA-ACGGGGACGUUAUAUGCUGCACAUGCUUAUAUGACCACUGCCCCCA-------GCC---ACCCAAUGACAACUAGA---
...((((.....)))).....((((.(((.--------..-..((((..((((((((..((....)).)))))))).....))))..-------...---.))).))))........--- ( -24.40)
>DroPse_CAF1 6081 117 - 1
UUUUACCCAUGCGCGACUAAAUUGGGGGAAAUUUUCCAAAAGCGGGG-UCUUAUGUAGUACACAUACUUAUAUAA--ACAGCCCCCACCCCCCAACAAAAACCCAAAGUCAACCAAAACU
..............((((...((((((((.....)))....(.((((-(.((((((((((....))).)))))))--...))))))...............))))))))).......... ( -26.40)
>DroSec_CAF1 4916 100 - 1
CCUUCACCAUGCGUGAUUAAAUCAUGGGGA--------CA-ACGGGGACGUUAUAUGCUGCACAUGCUUAUAUGACAACUGCCCCCAG-----AGCC---ACCCACUGACAACUAGA---
...((((.....)))).....(((((((..--------..-..((((..((((((((..((....)).)))))))).....))))...-----....---.)))).)))........--- ( -24.14)
>DroSim_CAF1 4939 100 - 1
CCUUCACCAUGCGUGAUUAAAUCAUGGGGA--------CA-ACGGGGACGUUAUAUGCAGCACAUGCUUAUAUGACAACUGCCCCCAG-----AGCC---CCCCACUGACAACUAGA---
...((((.....)))).....((((((((.--------..-..((((..((((((((.(((....))))))))))).....))))...-----....---))))).)))........--- ( -28.20)
>DroEre_CAF1 4816 90 - 1
CCUUGCCCAUGCGUGAUUAAAUCAUGGGGA--------CA-ACGGGGACGUUAUGUGCUGCACAUGCUUAUAUAGCAAC--------------AGCC----CCCAAGGACAACUAGA---
(((((((((((.((......))))))))..--------..-..((((..((((((((..((....)).))))))))...--------------..))----))))))).........--- ( -28.90)
>DroYak_CAF1 4391 100 - 1
CCUUGCCCAUGCGUGAUUAAAUCAUGGGGA--------CACACGGGGACGUUAUGUGCUUCACAUGCUUAUAUAACAACCAACUCCCC-----AACC----CCCAAGGACAACUAGA---
(((((((((((.((......))))))))..--------.....(((((.(((((((((.......))..))))))).......)))))-----....----..))))).........--- ( -26.50)
>consensus
CCUUCACCAUGCGUGAUUAAAUCAUGGGGA________CA_ACGGGGACGUUAUAUGCUGCACAUGCUUAUAUAACAACUGCCCCCA______AGCC___ACCCAAUGACAACUAGA___
...........(((((.....)))))(((..............(....)((((((((..((....)).)))))))).........................)))................ (-11.63 = -11.47 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:06 2006