| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 13,553,775 – 13,553,888 |
| Length | 113 |
| Max. P | 0.612016 |
| Location | 13,553,775 – 13,553,888 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 82.23 |
| Mean single sequence MFE | -37.30 |
| Consensus MFE | -21.79 |
| Energy contribution | -22.40 |
| Covariance contribution | 0.61 |
| Combinations/Pair | 1.29 |
| Mean z-score | -2.26 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.612016 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13553775 113 + 22224390 CUCUUAUUAUCGACAUCAUCAUCCGCUUCCAGGCAGGCCACCACCUGCUUCAGCGAUUUGCUAGAAACGUUCUUGCUCUUGCUGCCGGGUGAUAGCAGAGGCGAUAGCUUCUC .................((((((((.....(((((((......)))))))((((((...((.(((.....))).))..)))))).))))))))...((((((....)))))). ( -37.10) >DroPse_CAF1 9221 110 + 1 CCCUUUUUGUCCGCAU---CGUCCGCCUCCAGGCAGGCCACAACCUGCUUGAGUGACUUGUUCGAGCGGUUCCUGCUCUUGCUGCCCGGCGAUAGCAAUGGCGAAAGCUUCUC ..........((((.(---((..((..((((((((((......))))))))...))..))..)))))))....((((.(((((....))))).))))..(((....))).... ( -38.40) >DroSim_CAF1 3631 113 + 1 CUCUUAUUAUCGACAUCAUCAUCCGCUUCGAGGCAAGCCACCACCUGCUUCAGCGAUUUGCUAGACACGUUCUUGCUCUUGCUGCCGGGUGAUAGCAAAGGCGAUAGCUUCUC ......(((((......(((((((((...((((((.(......).))))))(((((...((.(((.....))).))..)))))).)))))))).((....)))))))...... ( -30.10) >DroYak_CAF1 8553 110 + 1 UUCUUAUUAUCGCCAU---CAUCGGCUUCCAAGCAAGCCACCACCUGCUUCAGCGAUUUGCUAGACACAUUCUUGCUCUUGCUGCCGGGUGAUAGCAGUGGCGAUAGCUUUUC ......((((((((((---....(((((......)))))..((((((...((((((...((.(((.....))).))..)))))).))))))......))))))))))...... ( -39.20) >DroAna_CAF1 9014 109 + 1 CACCU-UUUUCGCCAU---CAUCUGCAUCCAGGCAGGCCACCACCUGCUUCAGGGACUUGCUGGACAUGUUCUUGCUCUUGCUACCUGGCGAGAGCAGCGGCGACAGCUUCUC .....-...(((((..---..(((((((((.((((((......))))))....)))..))).))).......(((((((((((....))))))))))).)))))......... ( -40.60) >DroPer_CAF1 9005 110 + 1 CCCUUCUUGUCCGCAU---CGUCCGCCUCCAGGCAGGCCACAACCUGCUUGAGUGACUUGUUCGAGCGGUUCCUGCUCUUGCUGCCCGGCGAUAGCAAUGGCGAAAGCUUCUC ..........((((.(---((..((..((((((((((......))))))))...))..))..)))))))....((((.(((((....))))).))))..(((....))).... ( -38.40) >consensus CUCUUAUUAUCGACAU___CAUCCGCUUCCAGGCAGGCCACCACCUGCUUCAGCGACUUGCUAGACACGUUCUUGCUCUUGCUGCCGGGCGAUAGCAAUGGCGAUAGCUUCUC .......................(((....(((((((......)))))))..)))....((((....((((.(((((.(((((....))))).))))).)))).))))..... (-21.79 = -22.40 + 0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:56 2006