Locus 5190

Sequence ID X_DroMel_CAF1
Location 13,547,950 – 13,548,045
Length 95
Max. P 0.904865
window8416

overview

Window 6

Location 13,547,950 – 13,548,045
Length 95
Sequences 4
Columns 96
Reading direction forward
Mean pairwise identity 84.64
Mean single sequence MFE -24.60
Consensus MFE -14.46
Energy contribution -15.08
Covariance contribution 0.62
Combinations/Pair 1.17
Mean z-score -3.14
Structure conservation index 0.59
SVM decision value 1.04
SVM RNA-class probability 0.904865
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13547950 95 + 22224390
ACGUAUAUCUGGUCAUAUACACCAUAUGCAUAUGUUAUCCAAUUA-ACAUUACAUGUAUAUGAGGCAUUGAAUUGUAUGAAUUUUAAUGCUCUCUA
..((((((......))))))...((((((((((((((......))-))))...))))))))(((((((((((.(......).)))))))).))).. ( -24.20)
>DroSec_CAF1 2882 96 + 1
ACGUAUAUCUUGGCAUAUACACCAUAUGCAUAUGUUAUCCAAUCGGGUAUUACAUGUAUAUGAGGCAUUGAAUUGUAUGAAUUUUAAUGCUCUCUA
..((((((......))))))...((((((((.((.(((((....))))).)).))))))))(((((((((((.(......).)))))))).))).. ( -26.10)
>DroEre_CAF1 2850 93 + 1
ACGUAUAUCUGGGCAUAUA--CCGUACGCAUAUGUUGUCCAAUCGGGGAU-GCAUGUAUGUGAGGCAUUGAAUUGUAUGAAUUUUAAUGCUCUCUA
((((((((....((((...--(((...(((.....))).....)))..))-))))))))))(((((((((((.(......).)))))))).))).. ( -24.90)
>DroYak_CAF1 2828 82 + 1
ACAUAUAUCUGGGCAUAUA--CCAUAUGCAUA----------UCGGGUAU--UAUGUAUGUGAGGCAUUGAAUUGUAUGAAUUUUAAUGCUCUCUA
((((((((((((((((((.--..))))))...----------))))))).--)))))....(((((((((((.(......).)))))))).))).. ( -23.20)
>consensus
ACGUAUAUCUGGGCAUAUA__CCAUAUGCAUAUGUUAUCCAAUCGGGUAU_ACAUGUAUAUGAGGCAUUGAAUUGUAUGAAUUUUAAUGCUCUCUA
((((((((((((((((((.....)))))).............))))))))...))))....(((((((((((.(......).)))))))).))).. (-14.46 = -15.08 +   0.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:55 2006