| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 13,543,314 – 13,543,408 |
| Length | 94 |
| Max. P | 0.702076 |
| Location | 13,543,314 – 13,543,408 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 71.85 |
| Mean single sequence MFE | -29.62 |
| Consensus MFE | -21.30 |
| Energy contribution | -21.05 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.35 |
| Mean z-score | -0.86 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.702076 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13543314 94 - 22224390 UCGGAGCAUUGAGCGGCUCCGGCACAGCGGGCACGUACGGAAUGUGUAUGAUGCGCUCCUCGAUGACCUGAAUG----GAAGUGGA--AGAGCAAGAGCA .((((((........))))))((...(((.((((((.....))))))....)))((((.((.((..((.....)----)..)).))--.))))....)). ( -34.10) >DroPse_CAF1 27485 90 - 1 UCGGUAUAUUGAGCGGCUCGGGCUGGGCCGGCACAUAGGGAAUGUGUGUGAUGCGCUCCUCGAUGACCUGGAGAUCAGGAAACAGAGCG----------A (((.......(((((((((.....))))).(((((((.....))))))).....))))(((.....((((.....)))).....)))))----------) ( -29.40) >DroSec_CAF1 25440 92 - 1 UUGGAGCAUUGAGCGGCUCCGGCACAACGGGCACGUACGGAAUGUGUAUGAUGCGCUCCUCGAUGACCUGGAUG----GAAGGAGA--ACGGCAAGA--U (..(..(((((((.(((.(((......)))(((((((((.....)))))).)))))).)))))))..)..)...----........--.........--. ( -27.80) >DroEre_CAF1 25942 94 - 1 UCGGAGCAUUGAGCGGCUCCGGAACAGCGGGCACGUACGGAAUGUGUGUGAUGCGCUCCUCGAUGACCUGGAUG----GGAAGAGAGGGAGUCGGGA--G (((((((........)))))))....(((..(((((((.....))))))).))).((((.((((..(((.....----.......)))..)))))))--) ( -33.80) >DroWil_CAF1 23678 87 - 1 UGGGCAUAUUGAGCGGCUCUGGCUGGGCUGGCACAUAGGGAAUGUGUGUAAUGCGUUCCUCAAUGACCUAUAGA---GAAAACAGAAUG----------A ((((..(((((((((((((.....))))))(((((((.....))))))).........))))))).))))....---............----------. ( -25.10) >DroAna_CAF1 31242 80 - 1 UGGGAGCGUUGAGGGGCUCCGGCGUUGGGGGCACGUACGGAAUGUGUGUGAUUCGCUCCUCGAUGACCUGC-------GAAUUAGA--A----------- .(((..(((((((((((((((....)))).((((((.....)))))).......))))))))))).)))..-------........--.----------- ( -27.50) >consensus UCGGAGCAUUGAGCGGCUCCGGCACAGCGGGCACGUACGGAAUGUGUGUGAUGCGCUCCUCGAUGACCUGGAUG____GAAACAGA__A__________A ((((..(((((((.(((.(((......)))((((((.....)))))).......))).)))))))..))))............................. (-21.30 = -21.05 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:53 2006