Locus 5186

Sequence ID X_DroMel_CAF1
Location 13,536,657 – 13,536,761
Length 104
Max. P 0.995263
window8409

overview

Window 9

Location 13,536,657 – 13,536,761
Length 104
Sequences 5
Columns 105
Reading direction forward
Mean pairwise identity 96.74
Mean single sequence MFE -19.28
Consensus MFE -18.39
Energy contribution -18.23
Covariance contribution -0.16
Combinations/Pair 1.05
Mean z-score -1.81
Structure conservation index 0.95
SVM decision value 2.56
SVM RNA-class probability 0.995263
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13536657 104 + 22224390
AGAAAUUUCAUGUGUGCAAUUGCUGGCGACAAAUGACAUUUAAAAGCUCGCCAAAUUGCAGUCCAAAACCAACAAUAACAAG-GAGCCACAAAAACCACAUGUGC
........(((((((((((((..((((((..................))))))))))))).(((.................)-))...........))))))... ( -21.10)
>DroSec_CAF1 18730 104 + 1
AGAAAUUUCAUGUGUGCAAUUGCUGGCGACAAAUGACAUUUAAAAGCUCGCCAAAUUGCAGUCCAAAACCAACAAUAACAAA-GAGCCACAAAAACCACAUGUGC
........(((((((((((((..((((((..................)))))))))))))((.........)).........-.............))))))... ( -18.37)
>DroSim_CAF1 19440 104 + 1
AGAAAUUUCAUGUGUGCAAUUGCUGGCGACAAAUGACAUUUAAAAGCUCGCCAAAUUGCAGUCCAAAACCAACAAUAACAAA-GAGCCACAAAAACCACAUGUGC
........(((((((((((((..((((((..................)))))))))))))((.........)).........-.............))))))... ( -18.37)
>DroEre_CAF1 19177 104 + 1
CGAAAUUUCAUGUGUGCAAUUCCUGGCGACAAAUGACAUUUAAAAGCUCGCCAAAUUGCAGUCCAAAACCAACAGUAACAAA-AAGCCACAAAAACCACAUGUGC
........(((((((((((((..((((((..................)))))))))))))..............((......-..)).........))))))... ( -18.87)
>DroYak_CAF1 20807 105 + 1
CGAAAUUUCAUGUGUGCAAUUCCUGGCGACAAAUGACAUUUAAAAGCUCGCCGAAUUGCAGUCCAAAACCAACAAUAACAAAAAAGCCACAAAAACCACAUGUGC
........((((((((((((((..(((((..................)))))))))))))((.........)).......................))))))... ( -19.67)
>consensus
AGAAAUUUCAUGUGUGCAAUUGCUGGCGACAAAUGACAUUUAAAAGCUCGCCAAAUUGCAGUCCAAAACCAACAAUAACAAA_GAGCCACAAAAACCACAUGUGC
........(((((((((((((..((((((..................)))))))))))))((.........)).......................))))))... (-18.39 = -18.23 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:49 2006